Co-expression analysis

Gene ID Contig9001_at
Gene name
Homology with ArabidopsisSimilar to At4g08810: SUB1 (HF=3e-3)
Module size 6 genes
NF 0.39
%ile 53.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.73Contig9001_atContig9001--3e-3At4g08810SUB1O.I.H.G.S.X.
0.7187.10.73Contig9000_atContig9000--9e+0At2g21320zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4458.90.81Contig9473_atContig9473--6e-1At1g70480unknown proteinO.I.H.G.S.X.
0.4053.10.75Contig5907_atContig5907--3e-9At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.2528.90.73HD13A06r_atHD13A06r--4e+0At3g43430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1514.10.73HV_CEa0006I19r2_atHV_CEa0006I19r2--2e-1At3g60961ATP binding / nucleobase, nucleoside, nucleotide kinaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
14.799.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.997.9GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
4.897.0GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.296.3GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.7916.1.A1_at, orthologous to the query gene, Contig9001_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9299.2Zm.7916.1.A1_atAt4g08810--5e+0At5g5671060S ribosomal protein L31 (RPL31C)O.I.H.G.S.X.
0.5469.8Zm.2550.1.S1_atAt4g08810cinnamoyl CoA reductase1-2e-1At1g80820CCR2 (CINNAMOYL COA REDUCTASE)O.I.H.G.S.X.
0.4556.4Zm.3770.2.A1_atAt4g08810hypothetical protein LOC100278844-2e-47At5g07290AML4 (ARABIDOPSIS MEI2-LIKE 4)O.I.H.G.S.X.
0.3844.2Zm.369.1.A1_atAt4g08810low molecular weight heat shock protein precursor-9e-3At4g25200ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)O.I.H.G.S.X.
0.3641.3ZmAffx.401.1.S1_atAt4g08810--2e-1At5g46030unknown proteinO.I.H.G.S.X.
0.3641.3Zm.3977.1.A1_atAt4g08810pre-mRNA-splicing factor SF2-2e-16At1g09140SF2/ASF-like splicing modulator (SRP30)O.I.H.G.S.X.
0.3437.2Zm.18044.1.A1_atAt4g08810RNA polymerase II largest subunit-2e-123At4g35800NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)O.I.H.G.S.X.
0.3437.2Zm.1028.1.S1_atAt4g08810hypothetical protein LOC100274540-1e-15At3g21690MATE efflux family proteinO.I.H.G.S.X.
0.3233.4Zm.3664.1.S1_atAt4g08810hypothetical protein LOC100192489-1e-15At5g45430protein kinase, putativeO.I.H.G.S.X.
0.3029.8Zm.12994.1.S1_atAt4g08810--7e-4At5g60980nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2928.1Zm.18024.1.S1_atAt4g08810thylakoid assembly8-3e-2At1g54215proline-rich family proteinO.I.H.G.S.X.
0.2928.1Zm.12687.1.S1_atAt4g08810auxin efflux carrier component 1c-2e-7At5g57090EIR1 (ETHYLENE INSENSITIVE ROOT 1)O.I.H.G.S.X.
0.2928.1Zm.6732.1.S1_s_atAt4g08810HMG-like nucleosome/chromatin assembly factor D-3e-11At1g20696HMGB3 (HIGH MOBILITY GROUP B 3)O.I.H.G.S.X.
0.2724.6Zm.10690.1.S1_atAt4g08810peptide methionine sulfoxide reductase msrB-3e-5At4g04830methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinO.I.H.G.S.X.
0.2724.6Zm.980.1.S1_atAt4g08810DNA repair protein RAD23-2e-7At5g38470DNA repair protein RAD23, putativeO.I.H.G.S.X.
0.2419.8Zm.16454.1.S1_atAt4g08810hypothetical protein LOC100272380-2e-4At2g02370-O.I.H.G.S.X.
0.2115.5Zm.7088.1.S1_atAt4g08810charged multivesicular body protein 4b-9e-31At2g19830SNF7.2O.I.H.G.S.X.
0.1811.6Zm.10839.1.S1_atAt4g08810--4e+0At5g08290YLS8O.I.H.G.S.X.
0.1811.6Zm.6995.1.A1_atAt4g08810prefoldin subunit 3-6e-10At5g49510PDF3 (PREFOLDIN 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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