Co-expression analysis

Gene ID Contig9001_at
Gene name
Homology with ArabidopsisSimilar to At4g08810: SUB1 (HF=3e-3)
Module size 6 genes
NF 0.39
%ile 53.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.73Contig9001_atContig9001--3e-3At4g08810SUB1O.I.H.G.S.X.
0.7187.10.73Contig9000_atContig9000--9e+0At2g21320zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4458.90.81Contig9473_atContig9473--6e-1At1g70480unknown proteinO.I.H.G.S.X.
0.4053.10.75Contig5907_atContig5907--3e-9At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.2528.90.73HD13A06r_atHD13A06r--4e+0At3g43430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1514.10.73HV_CEa0006I19r2_atHV_CEa0006I19r2--2e-1At3g60961ATP binding / nucleobase, nucleoside, nucleotide kinaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
14.799.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.997.9GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
4.897.0GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.296.3GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1613013_at, orthologous to the query gene, Contig9001_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8895.41613013_atAt4g08810--3e-39At4g08810SUB1O.I.H.G.S.X.
0.4666.51619735_atAt4g08810hypothetical protein LOC100258926-1e-34At2g15430NRPB3O.I.H.G.S.X.
0.4666.51613735_atAt4g08810hypothetical protein LOC100264792-4e-64At2g3273026S proteasome regulatory subunit, putativeO.I.H.G.S.X.
0.4361.51617566_atAt4g08810hypothetical protein LOC100247823-1e+0At3g17310methyltransferase family proteinO.I.H.G.S.X.
0.4260.11618841_s_atAt4g08810hypothetical protein LOC100259947-1e+0At4g36791unknown proteinO.I.H.G.S.X.
0.4057.71620466_atAt4g08810hypothetical protein LOC100246357-7e-27At5g56280CSN6AO.I.H.G.S.X.
0.3345.71614306_atAt4g08810hypothetical protein LOC100265168-3e-1At2g01070-O.I.H.G.S.X.
0.3243.11617050_atAt4g08810hypothetical protein LOC100249740-2e-2At1g11400PYM (Partner of Y14-Mago)O.I.H.G.S.X.
0.2530.51617113_atAt4g08810hypothetical protein LOC100257592-1e-1At5g15600SP1L4 (SPIRAL1-LIKE4)O.I.H.G.S.X.
0.2428.71611967_atAt4g08810hypothetical protein LOC100257282-2e+0At5g46915transcriptional factor B3 family proteinO.I.H.G.S.X.
0.2327.51619938_atAt4g08810hypothetical protein LOC100254408-2e-1At3g51950zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2327.51607898_atAt4g08810hypothetical protein LOC100263388-1e+0At3g03210unknown proteinO.I.H.G.S.X.
0.2022.41613455_atAt4g08810--5e-69At4g34570THY-2 (thymidylate synthase 2)O.I.H.G.S.X.
0.1819.41609235_atAt4g08810hypothetical protein LOC100248030-1e-1At5g37370ATSRL1O.I.H.G.S.X.
0.1414.41612599_atAt4g08810hypothetical protein LOC100265811-3e-4At2g25720unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage