Co-expression analysis

Gene ID Contig9001_at
Gene name
Homology with ArabidopsisSimilar to At4g08810: SUB1 (HF=3e-3)
Module size 6 genes
NF 0.39
%ile 53.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.73Contig9001_atContig9001--3e-3At4g08810SUB1O.I.H.G.S.X.
0.7187.10.73Contig9000_atContig9000--9e+0At2g21320zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4458.90.81Contig9473_atContig9473--6e-1At1g70480unknown proteinO.I.H.G.S.X.
0.4053.10.75Contig5907_atContig5907--3e-9At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.2528.90.73HD13A06r_atHD13A06r--4e+0At3g43430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1514.10.73HV_CEa0006I19r2_atHV_CEa0006I19r2--2e-1At3g60961ATP binding / nucleobase, nucleoside, nucleotide kinaseO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
14.799.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.997.9GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
4.897.0GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.296.3GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.1440.3.S1_a_at, orthologous to the query gene, Contig9001_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5273.7Ta.1440.3.S1_a_atAt4g08810--2e-1At3g04590DNA-binding family proteinO.I.H.G.S.X.
0.9094.8Ta.12561.2.S1_x_atAt4g08810--4e-2At1g13380unknown proteinO.I.H.G.S.X.
0.8493.6Ta.12561.3.S1_x_atAt4g08810--3e-2At1g13380unknown proteinO.I.H.G.S.X.
0.8092.2Ta.4385.2.A1_atAt4g08810--7e-1At2g39020GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.7891.1Ta.4385.2.A1_x_atAt4g08810--7e-1At2g39020GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.7891.1Ta.12561.1.S1_x_atAt4g08810--3e-2At1g13380unknown proteinO.I.H.G.S.X.
0.7389.1Ta.25563.1.S1_atAt4g08810--3e-12At3g46830ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)O.I.H.G.S.X.
0.5879.2Ta.4385.1.S1_atAt4g08810--1e-2At1g05850POM1 (POM-POM1)O.I.H.G.S.X.
0.5475.5Ta.6466.1.S1_atAt4g08810--1e-29At5g09870CESA5 (CELLULOSE SYNTHASE 5)O.I.H.G.S.X.
0.5072.4Ta.27649.1.S1_atAt4g08810CesA protein-2e-80At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)O.I.H.G.S.X.
0.4260.9Ta.12561.1.S1_atAt4g08810--3e-2At1g13380unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays



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