Co-expression analysis

Gene ID Contig9001_at
Gene name
Homology with ArabidopsisSimilar to At4g08810: SUB1 (HF=3e-3)
Module size 6 genes
NF 0.39
%ile 53.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.73Contig9001_atContig9001--3e-3At4g08810SUB1O.I.H.G.S.X.
0.7187.10.73Contig9000_atContig9000--9e+0At2g21320zinc finger (B-box type) family proteinO.I.H.G.S.X.
0.4458.90.81Contig9473_atContig9473--6e-1At1g70480unknown proteinO.I.H.G.S.X.
0.4053.10.75Contig5907_atContig5907--3e-9At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.2528.90.73HD13A06r_atHD13A06r--4e+0At3g43430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1514.10.73HV_CEa0006I19r2_atHV_CEa0006I19r2--2e-1At3g60961ATP binding / nucleobase, nucleoside, nucleotide kinaseO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.899.8GSM238429Embryo 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
14.799.5GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.298.5GSM238426Endosperm 72 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM146379Maythorpe shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
5.997.9GSM282029Malting_day1_Merit_rep3GSE11200Expression data from malting barley seedsLink to GEO
4.897.0GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.396.4GSM282026Malting_day1_Legacy_rep4GSE11200Expression data from malting barley seedsLink to GEO
4.296.3GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
4.296.3GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
4.296.3GSM282028Malting_day1_Merit_rep1GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g08810, orthologous to the query gene, Contig9001_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage