Co-expression analysis

Gene ID Contig8976_at
Gene name
Homology with ArabidopsisSimilar to At3g14420: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (HF=1e-20)
Module size 6 genes
NF 0.73
%ile 93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.96Contig8976_atContig8976--1e-20At3g14420(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putativeO.I.H.G.S.X.
0.8092.50.97Contig8959_atContig8959--2e+0At3g33393unknown proteinO.I.H.G.S.X.
0.6784.70.97Contig7117_atContig7117--8e-4At3g17880ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)O.I.H.G.S.X.
0.6784.70.97Contig8181_atContig8181--2e-119At1g55350DEK1 (DEFECTIVE KERNEL 1)O.I.H.G.S.X.
0.6784.70.97HW08D24u_s_atHW08D24u--3e+0At4g33360terpene cyclase/mutase-relatedO.I.H.G.S.X.
0.5066.90.96Contig12806_atContig12806--3e-30At1g50030TOR (TARGET OF RAPAMYCIN)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.697.7GSM431568pathogen isolates: Mock inoculated control - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
5.297.4GSM431550pathogen isolates: Polymyxa graminis - rep2GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
5.297.4GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
5.197.3GSM431570pathogen isolates: Mock inoculated control - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.897.0GSM431573pathogen isolates: Polymyxa betae - rep3GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.796.9GSM431571pathogen isolates: Polymyxa betae - rep1GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.696.8GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.696.8GSM431569pathogen isolates: Mock inoculated control - rep2GSE17240Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betaeLink to GEO
4.496.6GSM282032Malting_day1_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
4.396.4GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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