Co-expression analysis

Gene ID	Contig8976_at
Gene name
Homology with Arabidopsis	Similar to At3g14420: (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (HF=1e-20)
Module size	6 genes
NF	0.73
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig8976_at	Contig8976	-	-	1e-20	At3g14420	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.97	Contig8959_at	Contig8959	-	-	2e+0	At3g33393	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig7117_at	Contig7117	-	-	8e-4	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig8181_at	Contig8181	-	-	2e-119	At1g55350	DEK1 (DEFECTIVE KERNEL 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	HW08D24u_s_at	HW08D24u	-	-	3e+0	At4g33360	terpene cyclase/mutase-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig12806_at	Contig12806	-	-	3e-30	At1g50030	TOR (TARGET OF RAPAMYCIN)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.7	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
5.2	97.4	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
5.2	97.4	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM431570	pathogen isolates: Mock inoculated control - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.8	97.0	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.7	96.9	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.6	96.8	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
4.4	96.6	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage