Co-expression analysis

Gene ID	Contig8975_at
Gene name
Homology with Arabidopsis	Similar to At4g36080: FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein (HF=2e-23)
Module size	8 genes
NF	0.35
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.96	Contig8975_at	Contig8975	-	-	2e-23	At4g36080	FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig9320_at	Contig9320	-	-	2e-1	At4g03940	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig23613_at	Contig23613	-	-	2e-12	At3g54030	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig18108_at	Contig18108	-	-	2e+0	At5g05990	mitochondrial glycoprotein family protein / MAM33 family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig3332_at	Contig3332	-	-	2e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	rbaak4i15_s_at	rbaak4i15	-	-	2e-6	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig5874_s_at	Contig5874	-	-	1e+0	At1g48610	AT hook motif-containing protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.95	Contig5995_at	Contig5995	-	-	2e+0	At3g12160	RABA4D (RAB GTPASE HOMOLOG A4D)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.0	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.8	95.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.0	93.8	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
2.8	93.1	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.8	93.1	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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