Co-expression analysis

Gene ID	Contig8970_at
Gene name
Homology with Arabidopsis	Similar to At5g20560: beta-1,3-glucanase, putative (HF=1e-2)
Module size	6 genes
NF	0.61
%ile	83.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.97	Contig8970_at	Contig8970	-	-	1e-2	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.98	Contig20805_at	Contig20805	-	-	6e-1	At1g47300	F-box family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.97	rbaal21l24_s_at	rbaal21l24	-	-	5e-1	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.98	Contig3172_at	Contig3172	-	-	3e-9	At1g22280	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.98	Contig10131_at	Contig10131	-	-	2e-7	At5g16710	DHAR3 (dehydroascorbate reductase 1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.97	Contig2142_s_at	Contig2142	plastocyanin precursor	-	1e+0	At1g20340	DRT112	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.3	99.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.5	98.6	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM146357	Golden Promise Root Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6	95.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.3	94.6	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.9	93.4	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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