Co-expression analysis

Gene ID	Contig8955_at
Gene name
Homology with Arabidopsis	Similar to At5g66110: metal ion binding (HF=1e-1)
Module size	6 genes
NF	0.61
%ile	83.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.91	Contig8955_at	Contig8955	-	-	1e-1	At5g66110	metal ion binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	Contig23168_at	Contig23168	-	-	4e-3	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.93	Contig6909_at	Contig6909	-	-	6e-113	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.93	Contig6908_at	Contig6908	-	-	1e+0	At3g60450	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.91	Contig5781_at	Contig5781	-	-	7e-20	At3g30841	2,3-biphosphoglycerate-independent phosphoglycerate mutase-related / phosphoglyceromutase-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig5352_at	Contig5352	-	-	2e+0	At5g62900	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.5	99.6	GSM311256	hsp5_without_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
13.9	99.5	GSM311253	hsp5_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
12.7	99.4	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
10.0	99.1	GSM311258	hsp5_without_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
9.3	99.0	GSM311257	hsp5_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
6.5	98.2	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.6	96.8	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.1	96.2	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.7	95.5	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
3.4	94.8	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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