Co-expression analysis

Gene ID	Contig8951_at
Gene name
Homology with Arabidopsis	Similar to At4g00090: transducin family protein / WD-40 repeat family protein (HF=9e-4)
Module size	7 genes
NF	0.41
%ile	56.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.96	Contig8951_at	Contig8951	-	-	9e-4	At4g00090	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.96	Contig7098_at	Contig7098	-	-	1e-2	At1g56360	PAP6 (PURPLE ACID PHOSPHATASE 6)	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig10104_at	Contig10104	-	-	1e-16	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.95	Contig1159_s_at	Contig1159	-	-	1e-4	At1g62540	FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig21572_at	Contig21572	-	-	5e-1	At5g48655	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig6232_at	Contig6232	-	-	8e-1	At2g01720	ribophorin I family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.95	Contig8742_at	Contig8742	-	-	1e-6	At3g61600	ATPOB1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.0	99.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
14.2	99.5	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.5	98.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.8	97.8	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.7	97.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.4	97.5	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.2	97.4	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.0	97.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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