Co-expression analysis

Gene ID	Contig8949_at
Gene name
Homology with Arabidopsis	Similar to At1g07810: ECA1 (ER-TYPE CA2+-ATPASE 1) (HF=4e-28)
Module size	6 genes
NF	0.10
%ile	12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	0.89	Contig8949_at	Contig8949	-	-	4e-28	At1g07810	ECA1 (ER-TYPE CA2+-ATPASE 1)	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.89	Contig12631_at	Contig12631	-	-	4e+0	At1g66520	pde194 (pigment defective 194)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.89	Contig1262_at	Contig1262	-	-	2e-38	At2g22310	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.89	Contig5690_at	Contig5690	-	-	2e-2	At1g04070	TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I)	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.90	HF01A04w_s_at	HF01A04w	-	-	1e+0	At5g45700	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.03	2.6	0.90	HVSMEb0013I22f_x_at	HVSMEb0013I22f	-	-	6e-1	At3g05290	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.8	99.6	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
14.1	99.5	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
12.6	99.4	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
12.2	99.4	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
11.1	99.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
10.9	99.2	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
5.4	97.5	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.0	96.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.6	95.3	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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