Co-expression analysis

Gene ID	Contig8943_at
Gene name
Homology with Arabidopsis	Similar to At1g75990: 26S proteasome regulatory subunit S3, putative (RPN3) (HF=1e-6)
Module size	6 genes
NF	0.58
%ile	80.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	72.0	0.96	Contig8943_at	Contig8943	-	-	1e-6	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig17683_at	Contig17683	-	-	2e+0	At3g11730	ATFP8	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.97	Contig6264_at	Contig6264	-	-	2e-5	At3g11330	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.97	Contig5894_s_at	Contig5894	-	-	3e-1	At5g33300	chromosome-associated kinesin-related	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig6739_at	Contig6739	-	-	4e-40	At1g69340	appr-1-p processing enzyme family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.97	HU09F16u_s_at	HU09F16u	-	-	8e-1	At2g30980	ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	96.2	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.0	93.8	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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