CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8925_at

Gene name
Homology with Arabidopsis Similar to At5g66060: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (HF=3e+0)

Module size 6 genes

NF 0.52

%ile 71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 78.7 0.96 Contig8925_at Contig8925 - - 3e+0 At5g66060 iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors O.I. H.G. S.X.
0.59 75.8 0.96 Contig13436_at Contig13436 - - 3e-1 At3g23200 unknown protein O.I. H.G. S.X.
0.55 72.0 0.96 Contig6491_at Contig6491 - - 6e-1 At5g02230 haloacid dehalogenase-like hydrolase family protein O.I. H.G. S.X.
0.53 69.7 0.96 Contig13168_at Contig13168 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.53 69.7 0.96 Contig8059_at Contig8059 - - 8e-18 At1g08720 EDR1 (ENHANCED DISEASE RESISTANCE 1) O.I. H.G. S.X.
0.29 35.5 0.96 Contig7178_s_at Contig7178 - - 2e+0 At4g35900 FD O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.4 98.1 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
6.0 97.9 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
6.0 97.9 GSM238433 Embryo 0 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM419972 Lemma_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.7 97.7 GSM440957 Control lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.7 97.7 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
5.4 97.5 GSM419975 Palea_Rep1 GSE16754 Comparative transcriptional profiling of organs of the barley spike
5.4 97.5 GSM440963 Control palea_Rep1 GSE17669 Gene expression in the barley spike during drought stress
5.3 97.4 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.2 97.4 GSM238432 Embryo 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the wheat gene, Ta.12758.1.S1_x_at, orthologous to the query gene, Contig8925_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 67.9 Ta.12758.1.S1_x_at At5g66060 - - 2e+0 At5g56980 unknown protein O.I. H.G. S.X.
0.57 79.2 Ta.6385.1.S1_at At5g66060 - - 7e-16 At4g33200 XI-I O.I. H.G. S.X.
0.50 72.4 Ta.4881.2.A1_a_at At5g66060 - - 1e+0 At5g06450 nucleic acid binding O.I. H.G. S.X.
0.43 62.2 Ta.523.1.S1_at At5g66060 - - 2e-5 At2g30880 pleckstrin homology (PH) domain-containing protein O.I. H.G. S.X.
0.39 56.1 TaAffx.4526.2.S1_at At5g66060 - - 1e+0 Atmg00920 - O.I. H.G. S.X.
0.36 51.9 Ta.6268.1.A1_at At5g66060 - - 8e-2 At4g32551 LUG (LEUNIG) O.I. H.G. S.X.
0.35 49.8 TaAffx.131691.1.S1_at At5g66060 - - 5e+0 At2g21150 XCT (XAP5 CIRCADIAN TIMEKEEPER) O.I. H.G. S.X.
0.33 46.9 Ta.9111.1.S1_at At5g66060 - - 4e+0 At5g02360 DC1 domain-containing protein O.I. H.G. S.X.
0.18 21.0 Ta.9887.3.A1_x_at At5g66060 - - 3e-2 At5g57290 60S acidic ribosomal protein P3 (RPP3B) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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