Co-expression analysis

Gene ID	Contig8925_at
Gene name
Homology with Arabidopsis	Similar to At5g66060: iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (HF=3e+0)
Module size	6 genes
NF	0.52
%ile	71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.96	Contig8925_at	Contig8925	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.96	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	0.96	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.96	Contig8059_at	Contig8059	-	-	8e-18	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.96	Contig7178_s_at	Contig7178	-	-	2e+0	At4g35900	FD	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.1	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.0	97.9	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.7	97.7	GSM440957	Control lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.7	97.7	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.4	97.5	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
5.2	97.4	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.28775.1.S1_at, orthologous to the query gene, Contig8925_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.81	91.7	GmaAffx.28775.1.S1_at	At5g66060	-	-	1e+0	At1g80520	-	O.I.	H.G.	S.X.	Please select
0.47	66.6	GmaAffx.1301.9.S1_at	At5g66060	-	-	1e-8	At5g35200	epsin N-terminal homology (ENTH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.1096.1.S1_at	At5g66060	-	-	4e-1	At3g15040	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.3836.1.S1_at	At5g66060	-	-	1e-26	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.10798.1.S1_at	At5g66060	-	-	2e-158	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.46711.1.S1_at	At5g66060	-	-	4e+0	At4g25560	AtMYB18 (myb domain protein 18)	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.3757.2.S1_a_at	At5g66060	-	-	8e-35	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.11267.3.S1_a_at	At5g66060	-	-	1e-7	At2g28370	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.58407.2.S1_at	At5g66060	-	-	1e-15	At3g50050	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.44003.1.S1_at	At5g66060	-	-	1e+0	At5g22280	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.31764.1.S1_at	At5g66060	-	-	6e-6	At1g54490	XRN4 (EXORIBONUCLEASE 4)	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.2314.1.S1_at	At5g66060	-	-	1e-33	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.15387.1.S1_s_at	At5g66060	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.6542.1.S1_at	At5g66060	-	-	3e-20	At2g01690	binding	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.6751.2.S1_at	At5g66060	-	-	2e+0	At4g18372	small nuclear ribonucleoprotein-related / snRNP-related	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.2787.1.S1_s_at	At5g66060	-	-	6e-17	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.72999.1.S1_at	At5g66060	-	-	1e-12	At4g39170	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.10823.1.S1_at	At5g66060	-	-	3e-32	At1g65220	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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