Co-expression analysis

Gene ID Contig8898_at
Gene name
Homology with ArabidopsisSimilar to At2g25570: binding (HF=2e-29)
Module size 6 genes
NF 0.87
%ile 98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.82Contig8898_atContig8898--2e-29At2g25570bindingO.I.H.G.S.X.
0.8394.00.77Contig2041_x_atContig2041--1e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.8394.00.80HVSMEg0001N20r2_atHVSMEg0001N20r2--3e+0At4g03050AOP3O.I.H.G.S.X.
0.8394.00.81Contig6006_s_atContig6006--3e+0At1g60830U2 snRNP auxiliary factor large subunit, putativeO.I.H.G.S.X.
0.8092.50.80Contig2041_atContig2041--1e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.7790.80.80Contig6005_x_atContig6005--3e-1At1g20130hydrolase, acting on ester bonds / lipase/ structural constituent of cell wallO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.899.6GSM688933 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
8.898.9GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
8.698.8GSM688923 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
8.098.7GSM6890327 h control replicate3GSE3097Barley1 salinity stress studyLink to GEO
7.998.7GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.698.2GSM688988 h salt stressed replicate 1GSE3097Barley1 salinity stress studyLink to GEO
6.698.2GSM688998 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO
6.298.0GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.097.9GSM6890527 h salt stressed replicate 2GSE3097Barley1 salinity stress studyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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