Co-expression analysis

Gene ID	Contig8880_at
Gene name
Homology with Arabidopsis	Similar to At4g09260: unknown protein (HF=4e-1)
Module size	6 genes
NF	0.49
%ile	68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	78.7	0.89	Contig8880_at	Contig8880	-	-	4e-1	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.84	Contig8877_s_at	Contig8877	-	-	1e+0	At5g19630	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig15665_at	Contig15665	-	-	1e+0	At1g16390	ATOCT3 (ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 3)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.87	Contig16074_at	Contig16074	-	-	2e+0	At2g17450	RHA3A	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.88	Contig15456_at	Contig15456	-	-	9e-2	At1g49310	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.88	Contig26360_at	Contig26360	-	-	1e+0	At2g39040	peroxidase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.5	99.4	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.5	99.2	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.8	98.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.1	98.0	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.2	97.4	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.2	96.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM238416	Endosperm 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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