Co-expression analysis

Gene ID Contig8855_at
Gene name
Homology with ArabidopsisSimilar to At5g23210: SCPL34 (HF=1e-3)
Module size 6 genes
NF 0.23
%ile 28.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5066.90.85Contig8855_atContig8855--1e-3At5g23210SCPL34O.I.H.G.S.X.
0.5066.90.88EBed02_SQ002_E18_s_atEBed02_SQ002_E18--6e+0At5g55810AtNMNAT (A. thaliana nicotinate/nicotinamide mononucleotide adenyltransferase)O.I.H.G.S.X.
0.3240.30.87Contig8749_atContig8749--3e+0At4g29730NFC5 (Nucleosome/chromatin assembly factor group C 5)O.I.H.G.S.X.
0.1412.90.90Contig2490_atContig2490--1e-6At1g62660beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolarO.I.H.G.S.X.
0.1412.90.90HVSMEc0009P17f_s_atHVSMEc0009P17f--1e-2At3g10280KCS14 (3-KETOACYL-COA SYNTHASE 14)O.I.H.G.S.X.
0.1311.60.90Contig7945_atContig7945--6e-57At1g53310ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.999.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
18.399.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
6.898.3GSM261025ABA-Early-rep2GSE10328ABA experimentLink to GEO
3.695.3GSM398250Martin_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
3.194.1GSM261031Dicktoo-control-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
3.194.1GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.993.4GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.692.3GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spikeLink to GEO
2.692.3GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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