Co-expression analysis

Gene ID	Contig8820_at
Gene name
Homology with Arabidopsis	Similar to At4g19270: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.73
%ile	93.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	1.00	Contig8820_at	Contig8820	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	1.00	Contig9959_at	Contig9959	-	-	4e-4	At1g02840	SR1	O.I.	H.G.	S.X.	Please select
0.67	84.7	1.00	Contig10011_at	Contig10011	-	-	1e+0	At2g43290	MSS3 (multicopy suppressors of snf4 deficiency in yeast 3)	O.I.	H.G.	S.X.	Please select
0.67	84.7	1.00	EBan01_SQ002_F13_at	EBan01_SQ002_F13	-	-	3e-1	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	1.00	Contig6434_at	Contig6434	-	-	3e-9	At1g07310	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	1.00	Contig25064_at	Contig25064	-	-	1e+0	At1g54215	proline-rich family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
29.7	99.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
29.3	99.9	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
26.4	99.8	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
13.9	99.5	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.4	99.2	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.7	98.6	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.4	97.5	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.6	95.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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