CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8795_at

Gene name
Homology with Arabidopsis Similar to At2g26500: cytochrome b6f complex subunit (petM), putative (HF=6e-1)

Module size 6 genes

NF 0.59

%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.96 Contig8795_at Contig8795 - - 6e-1 At2g26500 cytochrome b6f complex subunit (petM), putative O.I. H.G. S.X.
0.91 98.1 0.95 Contig21692_at Contig21692 - - 3e+0 At2g35970 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein O.I. H.G. S.X.
0.67 84.7 0.95 Contig22799_at Contig22799 - - 1e+0 At4g32551 LUG (LEUNIG) O.I. H.G. S.X.
0.50 66.9 0.96 Contig13944_at Contig13944 - - 3e-1 At2g47210 myb family transcription factor O.I. H.G. S.X.
0.43 56.4 0.96 Contig23686_at Contig23686 - - 4e+0 At2g10014 unknown protein O.I. H.G. S.X.
0.25 28.9 0.95 HU11L10u_s_at HU11L10u - - 2e+0 At1g59865 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.1	0.96	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.
0.91	98.1	0.95	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.
0.50	66.9	0.96	Contig13944_at	Contig13944	-	-	3e-1	At2g47210	myb family transcription factor	O.I.	H.G.	S.X.
0.43	56.4	0.96	Contig23686_at	Contig23686	-	-	4e+0	At2g10014	unknown protein	O.I.	H.G.	S.X.
0.25	28.9	0.95	HU11L10u_s_at	HU11L10u	-	-	2e+0	At1g59865	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	84.7	0.93	Contig21965_at	Contig21965	-	-	2e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	O.I.	H.G.	S.X.
0.67	84.7	0.93	Contig10967_at	Contig10967	-	-	2e+0	At3g52900	unknown protein	O.I.	H.G.	S.X.
0.67	84.7	0.95	Contig7267_at	Contig7267	-	-	1e-3	At5g07460	PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)	O.I.	H.G.	S.X.
0.61	78.7	0.92	Contig18925_at	Contig18925	-	-	8e-3	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.
0.59	75.8	0.91	Contig10566_at	Contig10566	-	-	2e-1	At1g50120	-	O.I.	H.G.	S.X.
0.57	74.9	0.93	Contig25639_at	Contig25639	-	-	6e+0	At5g48580	FKBP15-2	O.I.	H.G.	S.X.
0.55	72.0	0.94	Contig7265_s_at	Contig7265	-	-	1e-57	At5g47080	CKB1	O.I.	H.G.	S.X.
0.55	72.0	0.94	Contig11890_at	Contig11890	-	-	4e-5	At4g21580	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.
0.53	69.7	0.92	Contig5441_at	Contig5441	-	-	8e-84	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	O.I.	H.G.	S.X.
0.53	69.7	0.92	Contig5441_s_at	Contig5441	-	-	8e-84	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	O.I.	H.G.	S.X.
0.53	69.7	0.94	Contig9680_at	Contig9680	-	-	6e-2	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.
0.50	66.9	0.91	Contig24543_at	Contig24543	-	-	5e+0	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	O.I.	H.G.	S.X.
0.50	66.9	0.92	Contig7641_at	Contig7641	-	-	1e-11	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	O.I.	H.G.	S.X.
0.50	66.9	0.93	HZ46F11r_at	HZ46F11r	-	-	3e+0	At1g70944	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.94	Contig4320_at	Contig4320	-	-	3e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig20086_s_at	Contig20086	-	-	1e+0	At5g57570	-	O.I.	H.G.	S.X.
0.50	66.9	0.95	Contig13204_at	Contig13204	-	-	6e-1	At2g03570	unknown protein	O.I.	H.G.	S.X.
0.44	58.9	0.93	Contig15904_s_at	Contig15904	-	-	4e+0	At2g20130	LCV1 (LIKE COV 1)	O.I.	H.G.	S.X.
0.43	56.4	0.89	HU01I21w_at	HU01I21w	-	-	4e+0	At5g65720	NFS1	O.I.	H.G.	S.X.
0.40	53.1	0.88	HD10C22r_x_at	HD10C22r	-	-	2e-3	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.
0.40	53.1	0.91	Contig14464_at	Contig14464	-	-	5e+0	At1g09176	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.92	Contig17554_at	Contig17554	-	-	6e-1	At5g51840	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.95	Contig15097_at	Contig15097	-	-	3e-1	At5g51720	unknown protein	O.I.	H.G.	S.X.
0.40	53.1	0.95	Contig17421_at	Contig17421	-	-	4e+0	At1g45248	-	O.I.	H.G.	S.X.
0.40	53.1	0.96	Contig11313_at	Contig11313	-	-	6e-8	At5g58380	SIP1 (SOS3-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.
0.38	49.5	0.91	Contig5130_at	Contig5130	-	-	2e-3	At5g64460	-	O.I.	H.G.	S.X.
0.38	49.5	0.92	Contig197_s_at	Contig197	-	-	1e-24	At5g59690	histone H4	O.I.	H.G.	S.X.
0.38	49.5	0.92	HVSMEl0024B05r2_at	HVSMEl0024B05r2	-	-	4e+0	At5g08480	VQ motif-containing protein	O.I.	H.G.	S.X.
0.37	47.9	0.91	Contig15491_at	Contig15491	-	-	2e-10	At2g16460	metal ion binding	O.I.	H.G.	S.X.
0.37	47.9	0.91	Contig460_s_at	Contig460	sucrose synthase	-	6e-12	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	O.I.	H.G.	S.X.
0.36	47.1	0.91	Contig21112_at	Contig21112	-	-	6e+0	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.
0.36	47.1	0.92	Contig12315_at	Contig12315	-	-	7e-3	At1g71865	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.93	Contig8984_at	Contig8984	-	-	2e+0	At2g05520	GRP-3 (GLYCINE-RICH PROTEIN 3)	O.I.	H.G.	S.X.
0.36	47.1	0.94	Contig9037_at	Contig9037	-	-	1e-1	At3g42310	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.94	Contig10756_x_at	Contig10756	-	-	2e+1	At5g53820	unknown protein	O.I.	H.G.	S.X.
0.36	47.1	0.90	HV_CEa0006E02r2_s_at	HV_CEa0006E02r2	-	-	4e+0	At3g06020	unknown protein	O.I.	H.G.	S.X.
0.35	45.1	0.95	Contig10567_s_at	Contig10567	-	-	4e+0	At5g10450	GRF6 (G-box regulating factor 6)	O.I.	H.G.	S.X.
0.35	45.1	0.92	HV_CEb0001K01r2_at	HV_CEb0001K01r2	-	-	4e+0	At4g04680	-	O.I.	H.G.	S.X.
0.33	42.6	0.89	Contig17160_at	Contig17160	-	-	1e-1	At4g26110	NAP1	O.I.	H.G.	S.X.
0.33	42.6	0.91	Contig1828_at	Contig1828	-	-	8e-12	At4g37930	SHM1 (SERINE TRANSHYDROXYMETHYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.33	42.6	0.91	Contig24700_at	Contig24700	-	-	2e-1	At4g12970	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.91	rbags17a19_s_at	rbags17a19	-	-	2e+0	At5g66985	unknown protein	O.I.	H.G.	S.X.
0.33	42.6	0.91	HVSMEk0001A06r2_at	HVSMEk0001A06r2	-	-	7e-5	At2g40590	40S ribosomal protein S26 (RPS26B)	O.I.	H.G.	S.X.
0.33	42.6	0.92	Contig7137_at	Contig7137	-	-	3e+0	At1g44446	CH1 (CHLORINA 1)	O.I.	H.G.	S.X.
0.33	42.6	0.92	Contig22529_at	Contig22529	-	-	1e-58	Atcg00740	-	O.I.	H.G.	S.X.
0.33	42.6	0.93	HVSMEl0002M03r2_x_at	HVSMEl0002M03r2	-	-	4e+1	At5g55630	ATKCO1	O.I.	H.G.	S.X.
0.33	42.6	0.94	Contig9671_s_at	Contig9671	-	-	7e-1	At4g18940	cyclic phosphodiesterase, putative	O.I.	H.G.	S.X.
0.33	42.6	0.95	Contig14234_at	Contig14234	-	-	4e-1	At1g50570	C2 domain-containing protein	O.I.	H.G.	S.X.
0.32	40.3	0.88	EBma04_SQ002_L23_s_at	EBma04_SQ002_L23	-	-	7e+0	At3g51230	unknown protein	O.I.	H.G.	S.X.
0.32	40.3	0.89	HF04B14r_s_at	HF04B14r	-	-	3e+0	At2g05915	unknown protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.6 96.8 GSM372962 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2 96.3 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
3.9 95.8 GSM261033 Dicktoo-chilling-rep1 GSE10329 Low temperature stress in cv. Dicktoo
3.8 95.7 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
3.7 95.5 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
3.6 95.3 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2 94.3 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
3.1 94.1 GSM382234 Root_Hg3 GSE15295 Mercury toxicity in barley roots
3.1 94.1 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
2.9 93.4 GSM261070 Albina f-17 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.6	96.8	GSM372962	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.8	95.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Contig8795_at
Gene name
Homology with Arabidopsis	Similar to At2g26500: cytochrome b6f complex subunit (petM), putative (HF=6e-1)
Module size	6 genes
NF	0.59
%ile	81.4

Co-expression analysis

Gene ID Contig8795_at Gene name Homology with ArabidopsisSimilar to At2g26500: cytochrome b6f complex subunit (petM), putative (HF=6e-1) Module size 6 genes NF 0.59 %ile 81.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Contig8795_at

Gene name
Homology with Arabidopsis Similar to At2g26500: cytochrome b6f complex subunit (petM), putative (HF=6e-1)

Module size 6 genes

NF 0.59

%ile 81.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays