Co-expression analysis

Gene ID Contig8795_at
Gene name
Homology with ArabidopsisSimilar to At2g26500: cytochrome b6f complex subunit (petM), putative (HF=6e-1)
Module size 6 genes
NF 0.59
%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig8795_atContig8795--6e-1At2g26500cytochrome b6f complex subunit (petM), putativeO.I.H.G.S.X.
0.9198.10.95Contig21692_atContig21692--3e+0At2g35970harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.6784.70.95Contig22799_atContig22799--1e+0At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.5066.90.96Contig13944_atContig13944--3e-1At2g47210myb family transcription factorO.I.H.G.S.X.
0.4356.40.96Contig23686_atContig23686--4e+0At2g10014unknown proteinO.I.H.G.S.X.
0.2528.90.95HU11L10u_s_atHU11L10u--2e+0At1g59865unknown proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.8GSM372962genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.296.3GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.895.7GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.695.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.194.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.194.1GSM282030Malting_day4_Harrington_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.6964.1.S1_at, orthologous to the query gene, Contig8795_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.1Zm.6964.1.S1_atAt2g26500--6e-2At4g22320unknown proteinO.I.H.G.S.X.
0.7389.9Zm.15678.1.A1_atAt2g26500hypothetical protein LOC100192926-7e+0At4g18280glycine-rich cell wall protein-relatedO.I.H.G.S.X.
0.6785.8Zm.13076.1.A1_atAt2g26500--2e+0At1g07350transformer serine/arginine-rich ribonucleoprotein, putativeO.I.H.G.S.X.
0.6785.8Zm.13595.1.A1_atAt2g26500phosphatase phospho1-2e-6At1g73010phosphataseO.I.H.G.S.X.
0.5775.1Zm.2454.1.A1_atAt2g26500DNA-binding protein-3e-4At4g25320DNA-binding protein-relatedO.I.H.G.S.X.
0.4048.5Zm.6054.2.S1_atAt2g26500--6e-4At2g41740VLN2 (VILLIN 2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage