Co-expression analysis

Gene ID	Contig8795_at
Gene name
Homology with Arabidopsis	Similar to At2g26500: cytochrome b6f complex subunit (petM), putative (HF=6e-1)
Module size	6 genes
NF	0.59
%ile	81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.96	Contig8795_at	Contig8795	-	-	6e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please select
0.91	98.1	0.95	Contig21692_at	Contig21692	-	-	3e+0	At2g35970	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.95	Contig22799_at	Contig22799	-	-	1e+0	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.96	Contig13944_at	Contig13944	-	-	3e-1	At2g47210	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig23686_at	Contig23686	-	-	4e+0	At2g10014	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.95	HU11L10u_s_at	HU11L10u	-	-	2e+0	At1g59865	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM372962	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
3.9	95.8	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.8	95.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.7	95.5	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots
3.6	95.3	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
2.9	93.4	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.220172.1.S1_at, orthologous to the query gene, Contig8795_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.32	55.2	PtpAffx.220172.1.S1_at	At2g26500	-	-	2e-1	At2g26500	cytochrome b6f complex subunit (petM), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.93376.1.A1_at	At2g26500	-	-	7e-5	At5g38760	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.203708.1.S1_at	At2g26500	hypothetical protein	-	4e+0	At4g30993	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	PtpAffx.110063.1.A1_at	At2g26500	-	-	3e+0	At1g79880	La domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.99531.1.S1_at	At2g26500	-	-	2e+0	At4g36110	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.41884.1.S1_at	At2g26500	hypothetical protein	-	1e-1	At4g37720	ATPSK6 (PHYTOSULFOKINE 6 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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