Co-expression analysis

Gene ID Contig8795_at
Gene name
Homology with ArabidopsisSimilar to At2g26500: cytochrome b6f complex subunit (petM), putative (HF=6e-1)
Module size 6 genes
NF 0.59
%ile 81.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.96Contig8795_atContig8795--6e-1At2g26500cytochrome b6f complex subunit (petM), putativeO.I.H.G.S.X.
0.9198.10.95Contig21692_atContig21692--3e+0At2g35970harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.6784.70.95Contig22799_atContig22799--1e+0At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.5066.90.96Contig13944_atContig13944--3e-1At2g47210myb family transcription factorO.I.H.G.S.X.
0.4356.40.96Contig23686_atContig23686--4e+0At2g10014unknown proteinO.I.H.G.S.X.
0.2528.90.95HU11L10u_s_atHU11L10u--2e+0At1g59865unknown proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.8GSM372962genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1GSE14930Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance geneLink to GEO
4.296.3GSM382237Root_Control3GSE15295Mercury toxicity in barley rootsLink to GEO
3.995.8GSM261033Dicktoo-chilling-rep1GSE10329Low temperature stress in cv. DicktooLink to GEO
3.895.7GSM440960Stressed lemma_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
3.795.5GSM382233Root_Hg2GSE15295Mercury toxicity in barley rootsLink to GEO
3.695.3GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.294.3GSM382236Root_Control2GSE15295Mercury toxicity in barley rootsLink to GEO
3.194.1GSM382234Root_Hg3GSE15295Mercury toxicity in barley rootsLink to GEO
3.194.1GSM282030Malting_day4_Harrington_rep2GSE11200Expression data from malting barley seedsLink to GEO
2.993.4GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0126300, orthologous to the query gene, Contig8795_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os05g0126300At2g26500-Conserved hypothetical protein1e-2At3g57740protein kinase family proteinO.I.H.G.S.X.
0.6787.2Os04g0550400At2g26500-Conserved hypothetical protein4e-1At2g44950HUB1 (HISTONE MONO-UBIQUITINATION 1)O.I.H.G.S.X.
0.6787.2Os03g0213300At2g26500-Hypothetical protein7e-1At1g47495unknown proteinO.I.H.G.S.X.
0.5068.0Os07g0623100At2g26500-ER66 protein (Fragment)3e-6At5g09410EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN)O.I.H.G.S.X.
0.3440.0Os12g0102400At2g26500-RNA-binding region RNP-1 (RNA recognition motif)domain containing protein6e-16At3g45630RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3338.8Os07g0497000At2g26500-Chromodomain helicase-DNA-binding protein Mi-2homolog (dMi-2)2e-48At5g44800CHR4 (CHROMATIN REMODELING 4)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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