Co-expression analysis

Gene ID Contig875_s_at
Gene name
Homology with ArabidopsisSimilar to At3g05150: sugar transporter family protein (HF=2e-3)
Module size 33 genes
NF 0.28
%ile 36.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8795.00.93Contig875_s_atContig875--2e-3At3g05150sugar transporter family proteinO.I.H.G.S.X.
0.4762.20.96HVSMEk0023O04r2_atHVSMEk0023O04r2--8e-2At4g36740ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)O.I.H.G.S.X.
0.4356.40.94Contig9679_atContig9679--2e-1At5g48370thioesterase family proteinO.I.H.G.S.X.
0.3747.90.95Contig17499_atContig17499--5e-1At2g10930unknown proteinO.I.H.G.S.X.
0.3747.90.95HI14F16r_s_atHI14F16r--8e+0At5g59360unknown proteinO.I.H.G.S.X.
0.3240.30.94Contig11835_atContig11835--5e-2At1g62400HT1 (high leaf temperature 1)O.I.H.G.S.X.
0.3240.30.95Contig17635_atContig17635--5e+0At5g44080bZIP transcription factor family proteinO.I.H.G.S.X.
0.3240.30.95Contig13264_atContig13264--2e+0At3g55860unknown proteinO.I.H.G.S.X.
0.3138.60.95Contig18590_atContig18590--2e-1At1g80530nodulin family proteinO.I.H.G.S.X.
0.3138.60.94HA03F09r_s_atHA03F09r--3e-1At4g14713PPD1 (PEAPOD 1)O.I.H.G.S.X.
0.3037.00.95Contig13967_atContig13967--8e-6At1g29800phosphoinositide binding / zinc ion bindingO.I.H.G.S.X.
0.2935.50.96Contig18534_atContig18534--8e-1At2g33775RALFL19 (ralf-like 19)O.I.H.G.S.X.
0.2935.50.94Contig3995_s_atContig3995--7e+0At5g42300UBL5 (UBIQUITIN-LIKE PROTEIN 5)O.I.H.G.S.X.
0.2935.50.95Contig8532_atContig8532--1e-5At5g16120hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.2935.50.94rbaal0c08_s_atrbaal0c08--5e+0At4g02235AGL51O.I.H.G.S.X.
0.2935.50.95Contig19949_atContig19949--7e+0At3g02620acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeO.I.H.G.S.X.
0.2732.10.95Contig8077_atContig8077--7e-9At5g05710pleckstrin homology (PH) domain-containing proteinO.I.H.G.S.X.
0.2630.40.95Contig22601_atContig22601--2e+0At3g62610ATMYB11 (MYB DOMAIN PROTEIN 11)O.I.H.G.S.X.
0.2528.90.94Contig12106_atContig12106--3e-6At4g21460unknown proteinO.I.H.G.S.X.
0.2427.20.95Contig13646_atContig13646--1e+0At1g26660c-myc binding protein, putative / prefoldin, putativeO.I.H.G.S.X.
0.2427.20.96Contig16867_atContig16867--7e-9At3g02690integral membrane family proteinO.I.H.G.S.X.
0.2326.10.96Contig1498_s_atContig1498--7e-12At4g2574040S ribosomal protein S10 (RPS10A)O.I.H.G.S.X.
0.2326.10.95Contig5224_atContig5224--7e-9At1g32130-O.I.H.G.S.X.
0.2326.10.96Contig1512_atContig1512--0At5g12250TUB6 (BETA-6 TUBULIN)O.I.H.G.S.X.
0.2224.20.95Contig4660_s_atContig4660--2e-14At1g61700DNA-directed RNA polymerase II, putative (RPB10)O.I.H.G.S.X.
0.2224.20.94Contig2580_3_s_atContig2580_3---O.I.H.G.S.X.
0.2224.20.95Contig8146_atContig8146--6e-30At1g79830GC5 (golgin candidate 5)O.I.H.G.S.X.
0.2122.60.95Contig6283_atContig6283--1e-1At3g60410unknown proteinO.I.H.G.S.X.
0.2021.10.95Contig25066_atContig25066--5e+0At5g10730binding / catalytic/ coenzyme bindingO.I.H.G.S.X.
0.1919.60.96Contig13002_atContig13002--2e-10At1g45150unknown proteinO.I.H.G.S.X.
0.1919.60.97Contig6631_atContig6631--5e-1At1g72960root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.
0.1716.90.95Contig4923_atContig4923--9e-5At2g02560CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)O.I.H.G.S.X.
0.1412.90.95Contig4106_atContig4106--4e+0At2g42760unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.296.3GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.795.5GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.795.5GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.494.8GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.893.1GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barleyLink to GEO
2.893.1GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.390.9GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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