CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig873_s_at

Gene name
Homology with Arabidopsis Similar to At5g02500: HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) (HF=2e-121)

Module size 19 genes

NF 0.47

%ile 66.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 86.0 0.81 Contig873_s_at Contig873 - - 2e-121 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) O.I. H.G. S.X.
0.78 91.2 0.86 Contig24782_at Contig24782 - - 3e-11 At3g19340 - O.I. H.G. S.X.
0.77 90.8 0.86 Contig11315_at Contig11315 - - 1e-4 At1g47970 unknown protein O.I. H.G. S.X.
0.69 85.5 0.88 Contig6155_at Contig6155 - - 7e-1 At4g36540 BEE2 (BR Enhanced Expression 2) O.I. H.G. S.X.
0.58 74.9 0.89 Contig9756_at Contig9756 - - 2e-47 At3g62220 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.54 70.3 0.87 Contig21992_at Contig21992 - - 1e+0 At3g56130 biotin/lipoyl attachment domain-containing protein O.I. H.G. S.X.
0.51 67.5 0.87 Contig10438_at Contig10438 - - 2e-14 At4g33260 CDC20.2 O.I. H.G. S.X.
0.50 66.9 0.89 Contig17827_at Contig17827 - - 2e+0 At2g44110 MLO15 (MILDEW RESISTANCE LOCUS O 15) O.I. H.G. S.X.
0.49 63.7 0.86 Contig16853_at Contig16853 - - 6e-4 At2g02370 - O.I. H.G. S.X.
0.46 61.0 0.89 Contig9470_at Contig9470 - - 6e+0 At4g29980 unknown protein O.I. H.G. S.X.
0.44 58.9 0.90 Contig8625_at Contig8625 - - 2e-1 At3g04880 DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2) O.I. H.G. S.X.
0.40 53.1 0.89 Contig2784_at Contig2784 - - 2e-13 At5g19760 dicarboxylate/tricarboxylate carrier (DTC) O.I. H.G. S.X.
0.39 50.5 0.88 Contig4775_at Contig4775 - - 2e-13 At5g64200 ATSC35 O.I. H.G. S.X.
0.39 50.5 0.90 Contig9864_at Contig9864 - - 4e-8 At1g32070 ATNSI (NUCLEAR SHUTTLE INTERACTING) O.I. H.G. S.X.
0.38 49.5 0.89 Contig723_at Contig723 - - 8e-14 At2g19750 40S ribosomal protein S30 (RPS30A) O.I. H.G. S.X.
0.34 43.6 0.89 Contig7258_at Contig7258 - - 5e+0 At5g46030 unknown protein O.I. H.G. S.X.
0.32 40.3 0.89 Contig14102_at Contig14102 - - 1e-1 At2g32765 SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) O.I. H.G. S.X.
0.25 28.9 0.91 rbaal31m19_s_at rbaal31m19 - - 2e+0 At5g21110 unknown protein O.I. H.G. S.X.
0.22 24.2 0.90 Contig11298_at Contig11298 - - 1e-4 At1g02880 TPK1 (THIAMIN PYROPHOSPHOKINASE1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.2 98.0 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds
5.4 97.5 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM160464 drought control rep1 GSE6990 Barley drought stress
3.3 94.6 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
2.9 93.4 GSM238439 Embryo 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.7 92.7 GSM261045 after 3 days in mannitol medium rep1 GSE10330 Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.7 92.7 GSM238431 Embryo 25DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
2.6 92.3 GSM398258 Martin_5d_rep1 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
2.6 92.3 GSM146369 Golden Promise shoot Control, biological rep1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5 91.9 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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