Co-expression analysis

Gene ID Contig8739_at
Gene name
Homology with ArabidopsisSimilar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=3e-6)
Module size 27 genes
NF 0.59
%ile 81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8594.50.94Contig8739_atContig8739--3e-6At3g16150L-asparaginase, putative / L-asparagine amidohydrolase, putativeO.I.H.G.S.X.
0.7991.40.96Contig2986_atContig2986--1e-39At3g28710H+-transporting two-sector ATPase, putativeO.I.H.G.S.X.
0.7589.50.95Contig5246_s_atContig5246--3e-13At1g22450COX6B (CYTOCHROME C OXIDASE 6B)O.I.H.G.S.X.
0.7086.00.94Contig4656_atContig4656--1e-3At5g60570kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.6985.50.95Contig4302_atContig4302--8e-2At5g48640cyclin family proteinO.I.H.G.S.X.
0.6681.50.95Contig4574_atContig4574--7e+0At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.6480.90.96Contig3563_atContig3563--2e+0At5g54000oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.6380.30.96Contig2826_s_atContig2826--1e-21At3g44110ATJ3O.I.H.G.S.X.
0.6279.10.96Contig5248_s_atContig5248--4e+0At5g34882-O.I.H.G.S.X.
0.6279.10.94Contig6484_atContig6484--2e-1At3g04060anac046 (Arabidopsis NAC domain containing protein 46)O.I.H.G.S.X.
0.6178.70.96Contig4563_atContig4563--5e-15At3g17240mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)O.I.H.G.S.X.
0.5975.80.95Contig5417_atContig5417--4e+0At5g47610zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5975.80.95Contig3526_atContig3526--1e-3At1g11910aspartyl protease family proteinO.I.H.G.S.X.
0.5975.80.95Contig4907_s_atContig4907--5e-4At1g66340ETR1 (ETHYLENE RESPONSE 1)O.I.H.G.S.X.
0.5674.30.96Contig3878_atContig3878--9e-6At5g59890ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)O.I.H.G.S.X.
0.5674.30.97Contig3961_atContig3961--1e+0At3g29560unknown proteinO.I.H.G.S.X.
0.5674.30.96Contig5778_atContig5778--2e-10At4g22260IM (IMMUTANS)O.I.H.G.S.X.
0.5268.30.96Contig3794_atContig3794--7e-31At1g16890ubiquitin-conjugating enzyme, putativeO.I.H.G.S.X.
0.5066.90.97Contig3118_atContig3118--3e-68At3g27240cytochrome c1, putativeO.I.H.G.S.X.
0.4963.70.95Contig16303_atContig16303--2e+0Atmg01250-O.I.H.G.S.X.
0.4863.20.96Contig3197_atContig3197--1e-50At2g28190CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.4661.00.95EBma04_SQ003_K13_s_atEBma04_SQ003_K13--2e+0At3g60520unknown proteinO.I.H.G.S.X.
0.4661.00.96Contig6203_atContig6203--1e-3At1g70110lectin protein kinase family proteinO.I.H.G.S.X.
0.4661.00.96Contig3668_atContig3668--5e-1At5g02030RPL (REPLUMLESS)O.I.H.G.S.X.
0.4356.40.96Contig21707_atContig21707--3e+0At2g16890UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.4255.20.95Contig4747_atContig4747--2e+0At2g05620PGR5 (proton gradient regulation 5)O.I.H.G.S.X.
0.3950.50.96Contig3007_s_atContig3007--3e-7At3g10860ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.1GSM146367Maythorpe Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.792.7GSM146361Golden Promise Root Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.491.4GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.390.9GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.290.3GSM146366Maythorpe Root Salt, biological rep 1GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO
2.290.3GSM261047after 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.189.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.089.0GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.089.0GSM261070Albina f-17 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
2.089.0GSM146373Golden Promise shoot Salt, biological rep 2GSE6325Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden PromiseLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage