Co-expression analysis

Gene ID	Contig8739_at
Gene name
Homology with Arabidopsis	Similar to At3g16150: L-asparaginase, putative / L-asparagine amidohydrolase, putative (HF=3e-6)
Module size	27 genes
NF	0.59
%ile	81.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	94.5	0.94	Contig8739_at	Contig8739	-	-	3e-6	At3g16150	L-asparaginase, putative / L-asparagine amidohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.79	91.4	0.96	Contig2986_at	Contig2986	-	-	1e-39	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.95	Contig5246_s_at	Contig5246	-	-	3e-13	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	O.I.	H.G.	S.X.	Please select
0.70	86.0	0.94	Contig4656_at	Contig4656	-	-	1e-3	At5g60570	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.69	85.5	0.95	Contig4302_at	Contig4302	-	-	8e-2	At5g48640	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.66	81.5	0.95	Contig4574_at	Contig4574	-	-	7e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.64	80.9	0.96	Contig3563_at	Contig3563	-	-	2e+0	At5g54000	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	0.96	Contig2826_s_at	Contig2826	-	-	1e-21	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.96	Contig5248_s_at	Contig5248	-	-	4e+0	At5g34882	-	O.I.	H.G.	S.X.	Please select
0.62	79.1	0.94	Contig6484_at	Contig6484	-	-	2e-1	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	O.I.	H.G.	S.X.	Please select
0.61	78.7	0.96	Contig4563_at	Contig4563	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig5417_at	Contig5417	-	-	4e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig3526_at	Contig3526	-	-	1e-3	At1g11910	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.95	Contig4907_s_at	Contig4907	-	-	5e-4	At1g66340	ETR1 (ETHYLENE RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig3878_at	Contig3878	-	-	9e-6	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.97	Contig3961_at	Contig3961	-	-	1e+0	At3g29560	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.96	Contig5778_at	Contig5778	-	-	2e-10	At4g22260	IM (IMMUTANS)	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	Contig3794_at	Contig3794	-	-	7e-31	At1g16890	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.97	Contig3118_at	Contig3118	-	-	3e-68	At3g27240	cytochrome c1, putative	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.95	Contig16303_at	Contig16303	-	-	2e+0	Atmg01250	-	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.96	Contig3197_at	Contig3197	-	-	1e-50	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.95	EBma04_SQ003_K13_s_at	EBma04_SQ003_K13	-	-	2e+0	At3g60520	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig6203_at	Contig6203	-	-	1e-3	At1g70110	lectin protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	Contig3668_at	Contig3668	-	-	5e-1	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig21707_at	Contig21707	-	-	3e+0	At2g16890	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.95	Contig4747_at	Contig4747	-	-	2e+0	At2g05620	PGR5 (proton gradient regulation 5)	O.I.	H.G.	S.X.	Please select
0.39	50.5	0.96	Contig3007_s_at	Contig3007	-	-	3e-7	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.1	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.7	92.7	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.4	91.4	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.3	90.9	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.2	90.3	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.2	90.3	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.1	89.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.0	89.0	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.0	89.0	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.0	89.0	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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