Co-expression analysis

Gene ID	Contig871_s_at
Gene name
Homology with Arabidopsis	Similar to At4g37530: peroxidase, putative (HF=1e+0)
Module size	11 genes
NF	0.44
%ile	61.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	80.9	0.96	Contig871_s_at	Contig871	-	-	1e+0	At4g37530	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.52	68.3	0.96	Contig5161_s_at	Contig5161	-	-	9e-3	At1g54860	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.96	Contig5117_at	Contig5117	-	-	8e-2	At5g60500	undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.96	Contig14753_at	Contig14753	-	-	4e-7	At5g38060	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig14472_at	Contig14472	-	-	4e-8	At1g28440	HSL1 (HAESA-Like 1)	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.96	Contig15156_at	Contig15156	-	-	2e+0	At1g48210	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.41	53.9	0.96	Contig125_at	Contig125	-	-	2e+0	At4g25720	QC (GLUTAMINYL CYCLASE)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig10279_at	Contig10279	-	-	3e+0	At1g52830	IAA6 (INDOLE-3-ACETIC ACID 6)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig5664_at	Contig5664	-	-	1e-2	At1g25450	KCS5 (3-KETOACYL-COA SYNTHASE 5)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig4175_at	Contig4175	-	-	1e-19	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig11464_at	Contig11464	-	-	6e-20	At1g55740	AtSIP1 (Arabidopsis thaliana seed imbibition 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	96.4	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.8	95.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.7	95.5	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.4	94.8	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.4	94.8	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
3.2	94.3	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.1	94.1	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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