Co-expression analysis

Gene ID Contig8703_at
Gene name
Homology with ArabidopsisSimilar to At3g21720: ICL (ISOCITRATE LYASE) (HF=2e-42)
Module size 6 genes
NF 0.84
%ile 98.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.10.98Contig8703_atContig8703--2e-42At3g21720ICL (ISOCITRATE LYASE)O.I.H.G.S.X.
0.8092.50.98rbaal21l24_s_atrbaal21l24--5e-1At4g34720AVA-P1O.I.H.G.S.X.
0.7790.80.98Contig20805_atContig20805--6e-1At1g47300F-box family proteinO.I.H.G.S.X.
0.7388.70.98Contig3172_atContig3172--3e-9At1g22280protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.7388.70.98Contig10131_atContig10131--2e-7At5g16710DHAR3 (dehydroascorbate reductase 1)O.I.H.G.S.X.
0.6784.70.98Contig22054_atContig22054--8e-2At2g02440unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.893.1GSM688978 h control replicate 3GSE3097Barley1 salinity stress studyLink to GEO
2.792.7GSM160744drought control rep2GSE6990Barley drought stressLink to GEO
2.792.7GSM238428Embryo 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.792.7GSM160815drought control rep3GSE6990Barley drought stressLink to GEO
2.591.9GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.591.9GSM688943 h salt stressed replicate 3GSE3097Barley1 salinity stress studyLink to GEO
2.591.9GSM261040Dicktoo-deacclimation-rep2GSE10329Low temperature stress in cv. DicktooLink to GEO
2.491.4GSM261032Dicktoo control-rep3GSE10329Low temperature stress in cv. DicktooLink to GEO
2.491.4GSM16081938% SWC rep1GSE6990Barley drought stressLink to GEO
2.491.4GSM261028ABA-Late-rep2GSE10328ABA experimentLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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