Co-expression analysis

Gene ID	Contig8702_at
Gene name
Homology with Arabidopsis	Similar to At3g56660: BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) (HF=5e-5)
Module size	15 genes
NF	0.32
%ile	42.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	0.90	Contig8702_at	Contig8702	-	-	5e-5	At3g56660	BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49)	O.I.	H.G.	S.X.	Please select
0.51	67.5	0.93	Contig4584_s_at	Contig4584	-	-	5e+0	At5g41810	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.94	HS05B02u_s_at	HS05B02u	-	-	3e-10	At4g14240	-	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.93	Contig1048_at	Contig1048	-	-	2e-130	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.93	Contig7028_at	Contig7028	-	-	7e-1	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.93	HP01K13T_at	HP01K13T	-	-	3e+0	At5g39540	-	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.93	Contig15862_s_at	Contig15862	-	-	7e-1	At1g69580	transcription factor	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.94	Contig3797_at	Contig3797	-	-	4e-1	At5g59720	HSP18.2 (heat shock protein 18.2)	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.93	Contig4515_at	Contig4515	-	-	4e-3	At1g53210	sodium/calcium exchanger family protein / calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.93	HV_CEb0012P03f_at	HV_CEb0012P03f	-	-	3e+0	At5g17390	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig8278_at	Contig8278	-	-	1e-3	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	HVSMEm0018N06r2_at	HVSMEm0018N06r2	-	-	4e+0	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.94	Contig11945_s_at	Contig11945	-	-	1e+0	At1g13450	DNA binding protein GT-1	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig13187_at	Contig13187	-	-	1e-2	At1g67320	DNA primase, large subunit family	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.94	Contig12406_at	Contig12406	-	-	2e-7	At1g76850	SEC5A (EXOCYST COMPLEX COMPONENT SEC5)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.8	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.2	94.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.8	93.1	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.7	92.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
2.4	91.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.4	91.4	GSM160464	drought control rep1	GSE6990	Barley drought stress
2.2	90.3	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
2.1	89.7	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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