Co-expression analysis

Gene ID	Contig8695_at
Gene name
Homology with Arabidopsis	Similar to At3g28140: calmodulin-binding protein (HF=3e+0)
Module size	6 genes
NF	0.64
%ile	86.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	0.97	Contig8695_at	Contig8695	-	-	3e+0	At3g28140	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.97	Contig12375_at	Contig12375	-	-	1e-4	At3g28940	avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.97	Contig10840_at	Contig10840	-	-	4e-6	At5g50780	ATP binding	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.97	Contig6082_at	Contig6082	-	-	2e+0	At3g52760	integral membrane Yip1 family protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.97	Contig21045_at	Contig21045	-	-	4e+0	At5g51130	methyltransferase	O.I.	H.G.	S.X.	Please select
0.42	55.2	0.97	Contig9509_at	Contig9509	-	-	7e-1	At3g23980	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.8	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.4	94.8	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.8	93.1	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.8	93.1	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.8	93.1	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.5	91.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.4	91.4	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
2.3	90.9	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
2.2	90.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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