Co-expression analysis

Gene ID	Contig8666_at
Gene name
Homology with Arabidopsis	Similar to At3g10420: sporulation protein-related (HF=1e-30)
Module size	6 genes
NF	0.18
%ile	21.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	58.9	0.94	Contig8666_at	Contig8666	-	-	1e-30	At3g10420	sporulation protein-related	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.95	Contig9165_at	Contig9165	-	-	2e-3	At4g31410	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	26.1	0.94	Contig9296_at	Contig9296	-	-	1e-1	At2g46030	UBC6 (ubiquitin-conjugating enzyme 6)	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.94	Contig9688_s_at	Contig9688	-	-	7e+0	At5g52970	thylakoid lumen 15.0 kDa protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	0.94	Contig16156_at	Contig16156	-	-	1e-4	At1g71010	phosphatidylinositol-4-phosphate 5-kinase family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	0.94	Contig10540_at	Contig10540	-	-	7e-8	At3g57890	tubulin-specific chaperone C-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.3	98.1	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM440968	Stressed palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.7	95.5	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM440962	Stressed lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage