Co-expression analysis

Gene ID	Contig8661_at
Gene name
Homology with Arabidopsis	Similar to At3g48298: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.56
%ile	78.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.87	Contig8661_at	Contig8661	-	-	1e+0	At3g48298	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.87	Contig7256_at	Contig7256	-	-	4e-8	At1g52870	peroxisomal membrane protein-related	O.I.	H.G.	S.X.	Please select
0.48	63.2	0.87	HZ45N21r_at	HZ45N21r	-	-	3e+0	At3g49330	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.87	Contig7255_at	Contig7255	-	-	6e+0	At3g26147	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	Contig4707_x_at	Contig4707	-	-	5e+0	At2g35900	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.93	Contig4710_at	Contig4710	-	-	3e-1	At2g17560	HMGB4 (HIGH MOBILITY GROUP B 4)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	98.4	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.2	98.0	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
5.2	97.4	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
4.6	96.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM372957	genotype: Mla6 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
4.1	96.2	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261074	Albina e-16 Control rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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