Co-expression analysis

Gene ID Contig861_at
Gene name
Homology with ArabidopsisSimilar to At3g43190: SUS4 (HF=3e-8)
Module size 37 genes
NF 0.16
%ile 19.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.60.87Contig861_atContig861--3e-8At3g43190SUS4O.I.H.G.S.X.
0.3240.30.93Contig12195_atContig12195--3e+0At1g67910unknown proteinO.I.H.G.S.X.
0.3138.60.93Contig16079_atContig16079--1e-4At2g37640EXP3O.I.H.G.S.X.
0.2935.50.90Contig20588_atContig20588--1e+0At5g38130transferase family proteinO.I.H.G.S.X.
0.2835.50.94Contig1382_atContig1382--5e-50At2g29960CYP5 (CYCLOPHILIN 5)O.I.H.G.S.X.
0.2835.50.94Contig15176_atContig15176--2e+0At3g47790ATATH7O.I.H.G.S.X.
0.2630.40.93rbaal39o21_atrbaal39o21--4e-4At1g29820unknown proteinO.I.H.G.S.X.
0.2427.20.91Contig993_atContig993--9e-6At4g19200proline-rich family proteinO.I.H.G.S.X.
0.2326.10.94Contig10510_atContig10510--9e-20At1g13900calcineurin-like phosphoesterase family proteinO.I.H.G.S.X.
0.2326.10.93Contig9341_atContig9341--2e-25At1g30450CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1)O.I.H.G.S.X.
0.2326.10.95Contig16054_atContig16054--4e-1At1g06830glutaredoxin family proteinO.I.H.G.S.X.
0.2122.60.95Contig10187_atContig10187--1e-2At1g72080unknown proteinO.I.H.G.S.X.
0.2122.60.92Contig10583_atContig10583--6e+0At5g09740HAM2 (histone acetyltransferase of the MYST family 2)O.I.H.G.S.X.
0.2122.60.91Contig11182_atContig11182--7e-25At5g36880acetyl-CoA synthetase, putative / acetate-CoA ligase, putativeO.I.H.G.S.X.
0.2122.60.91HS14H16r_s_atHS14H16r--2e+0At3g5602060S ribosomal protein L41 (RPL41G)O.I.H.G.S.X.
0.1919.60.95Contig10540_atContig10540--7e-8At3g57890tubulin-specific chaperone C-relatedO.I.H.G.S.X.
0.1919.60.93Contig19174_atContig19174--4e-1At2g26970exonuclease family proteinO.I.H.G.S.X.
0.1919.60.94Contig7941_s_atContig7941--2e+0At3g28950avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedO.I.H.G.S.X.
0.1818.20.93HF13K06r_atHF13K06r--9e-1At2g25840OVA4 (ovule abortion 4)O.I.H.G.S.X.
0.1716.90.93Contig18972_atContig18972--4e+0At3g05165sugar transporter, putativeO.I.H.G.S.X.
0.1615.30.93Contig14709_atContig14709--1e-7At3g15095unknown proteinO.I.H.G.S.X.
0.1514.10.93Contig17823_atContig17823--2e+0At5g52720metal ion bindingO.I.H.G.S.X.
0.1412.90.91HV_CEa0008J10r2_atHV_CEa0008J10r2--4e+0At3g61310DNA-binding family proteinO.I.H.G.S.X.
0.1412.90.95Contig24303_atContig24303--3e-1At3g09800protein bindingO.I.H.G.S.X.
0.1311.60.93Contig17809_atContig17809--1e+0At1g30972-O.I.H.G.S.X.
0.1311.60.94Contig4566_atContig4566--3e+0At4g32870unknown proteinO.I.H.G.S.X.
0.119.40.91HVSMEc0009F03r2_atHVSMEc0009F03r2--1e+0At4g18800ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)O.I.H.G.S.X.
0.119.40.92Contig10832_s_atContig10832--2e-28At5g20070ATNUDX19 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 19)O.I.H.G.S.X.
0.086.50.91Contig9935_atContig9935--2e+0At5g49510PDF3 (PREFOLDIN 3)O.I.H.G.S.X.
0.086.50.91Contig15524_atContig15524--3e-1At1g57730zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.086.50.93Contig2523_atContig2523--4e-93At1g07770RPS15A (ribosomal protein s15a)O.I.H.G.S.X.
0.075.80.95Contig14394_atContig14394--4e-1At2g20625unknown proteinO.I.H.G.S.X.
0.075.80.95Contig9524_atContig9524--2e+0At1g31400meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.075.80.92Contig16719_atContig16719--5e-1At5g13825unknown proteinO.I.H.G.S.X.
0.075.80.93Contig18956_atContig18956--8e-2At3g58340meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.054.10.93HU13K14u_atHU13K14u--4e-2At2g30530unknown proteinO.I.H.G.S.X.
0.054.10.94Contig12244_atContig12244--5e-1At1g12663-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.294.3GSM215731gibberellin treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
3.093.8GSM398250Martin_0d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
2.491.4GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
2.491.4GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.390.9GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.390.9GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
2.390.9GSM440966Stressed palea_Rep1GSE17669Gene expression in the barley spike during drought stressLink to GEO
2.390.9GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.290.3GSM130799control, biological rep1GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
2.290.3GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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