Co-expression analysis

Gene ID	Contig8515_s_at
Gene name
Homology with Arabidopsis	Similar to At4g09010: APX4 (ASCORBATE PEROXIDASE 4) (HF=8e-2)
Module size	19 genes
NF	0.32
%ile	42.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	95.2	0.94	Contig8515_s_at	Contig8515	-	-	8e-2	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	O.I.	H.G.	S.X.	Please select
0.49	63.7	0.96	Contig5540_at	Contig5540	-	-	1e-52	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.96	Contig5444_s_at	Contig5444	-	-	1e+0	At5g51210	OLEO3 (OLEOSIN3)	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.96	Contig10534_s_at	Contig10534	-	-	3e-7	At3g14080	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.94	Contig19826_at	Contig19826	-	-	2e+0	At1g16770	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig11845_at	Contig11845	-	-	2e+0	At2g35850	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	47.9	0.95	Contig7562_at	Contig7562	-	-	2e-1	At2g43180	catalytic	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.95	HD11F21r_at	HD11F21r	-	-	9e-1	At2g29452	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.95	Contig16123_at	Contig16123	-	-	2e-1	At5g07130	LAC13 (laccase 13)	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.96	Contig12257_at	Contig12257	-	-	2e-34	At5g51070	ERD1 (EARLY RESPONSIVE TO DEHYDRATION 1)	O.I.	H.G.	S.X.	Please select
0.30	37.0	0.95	Contig2963_at	Contig2963	-	-	4e-6	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.96	Contig16840_at	Contig16840	-	-	4e-1	At5g22545	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	0.97	Contig2830_at	Contig2830	-	-	2e-4	At5g22920	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	HD13H12r_s_at	HD13H12r	-	-	2e-1	At3g28710	H+-transporting two-sector ATPase, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	Contig17303_at	Contig17303	-	-	2e-2	At1g63170	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	0.95	rbags1b22_s_at	rbags1b22	-	-	2e-8	At3g26560	ATP-dependent RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig3806_s_at	Contig3806	-	-	1e-3	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	HW08B21u_s_at	HW08B21u	-	-	1e+1	At5g23903	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	0.94	Contig1122_s_at	Contig1122	-	-	1e-22	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.6	GSM311205	28-4_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
4.5	96.7	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM311204	28-4_with_aphids_1	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
3.2	94.3	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.9	93.4	GSM311261	kara_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.7	92.7	GSM311254	hsp5_with_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
2.7	92.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.6	92.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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