Co-expression analysis

Gene ID	Contig8475_at
Gene name
Homology with Arabidopsis	Similar to At3g15670: late embryogenesis abundant protein, putative / LEA protein, putative (HF=3e+0)
Module size	11 genes
NF	0.34
%ile	46.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.94	Contig8475_at	Contig8475	-	-	3e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig8266_at	Contig8266	-	-	2e+0	At1g44318	hemb2	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.95	Contig7306_at	Contig7306	-	-	1e+0	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	Contig1193_s_at	Contig1193	-	-	2e-2	At1g01520	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.95	Contig2443_at	Contig2443	-	-	5e-3	At5g05230	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig6023_s_at	Contig6023	-	-	3e-12	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.95	Contig7191_at	Contig7191	-	-	3e+0	At5g17950	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.95	Contig10218_at	Contig10218	-	-	2e+0	At2g44820	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.95	Contig8415_at	Contig8415	-	-	2e-5	At2g33510	protein binding	O.I.	H.G.	S.X.	Please select
0.21	22.6	0.96	Contig901_x_at	Contig901	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.20	21.1	0.95	Contig2670_x_at	Contig2670	-	-	5e-20	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.4	96.6	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.4	96.6	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
3.5	95.1	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.5	95.1	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.2	94.3	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.2	94.3	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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