Co-expression analysis

Gene ID	Contig8468_at
Gene name
Homology with Arabidopsis	Similar to At4g33050: EDA39 (embryo sac development arrest 39) (HF=1e-12)
Module size	6 genes
NF	0.66
%ile	88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig8468_at	Contig8468	-	-	1e-12	At4g33050	EDA39 (embryo sac development arrest 39)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.93	Contig11154_at	Contig11154	-	-	1e-15	At5g66210	CPK28	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.92	HR01A09u_at	HR01A09u	-	-	2e+0	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig6325_at	Contig6325	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig11957_at	Contig11957	-	-	5e-2	At3g48280	CYP71A25	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.93	Contig12027_at	Contig12027	ORG4	-	2e-3	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM372947	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.9	95.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.9	95.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.8	95.7	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.858.1.S1_at, orthologous to the query gene, Contig8468_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.5	ZmAffx.858.1.S1_at	At4g33050	hypothetical protein LOC100279877	-	8e-1	At1g11850	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.12739.1.S1_at	At4g33050	SR repressor protein	-	2e-1	At3g55460	SCL30	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.2684.1.A1_at	At4g33050	-	-	3e+0	At1g49510	emb1273 (embryo defective 1273)	O.I.	H.G.	S.X.	Please select
0.56	74.4	ZmAffx.536.1.S1_at	At4g33050	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.13664.1.S1_at	At4g33050	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.2463.2.S1_at	At4g33050	hypothetical protein LOC100193981	-	3e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.5775.1.A1_at	At4g33050	-	-	1e+1	At3g06600	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.9517.1.A1_at	At4g33050	-	-	2e+1	Atmg00630	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.1837.1.S1_a_at	At4g33050	cp protein	-	1e-2	At5g01610	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.12405.1.A1_at	At4g33050	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.1039.3.S1_at	At4g33050	Hypothetical protein LOC100194359	-	3e+0	At4g18580	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	ZmAffx.1207.1.A1_at	At4g33050	-	-	1e+1	At5g16960	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.8632.1.A1_at	At4g33050	-	-	5e+0	At3g55672	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	ZmAffx.719.1.A1_at	At4g33050	-	-	2e+0	At3g55646	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.17267.1.S1_at	At4g33050	hypothetical protein LOC100275082	-	5e-1	At1g80920	J8	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.1619.1.A1_at	At4g33050	-	-	1e+1	Atcg00760	-	O.I.	H.G.	S.X.	Please select
0.39	45.6	Zm.5495.1.S1_at	At4g33050	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.16895.1.A1_at	At4g33050	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	O.I.	H.G.	S.X.	Please select
0.36	41.3	ZmAffx.1169.1.A1_at	At4g33050	-	-	3e+0	At4g36540	BEE2 (BR Enhanced Expression 2)	O.I.	H.G.	S.X.	Please select
0.28	28.1	ZmAffx.900.1.A1_at	At4g33050	-	-	1e+1	At5g19480	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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