CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8468_at

Gene name
Homology with Arabidopsis Similar to At4g33050: EDA39 (embryo sac development arrest 39) (HF=1e-12)

Module size 6 genes

NF 0.66

%ile 88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.1 0.93 Contig8468_at Contig8468 - - 1e-12 At4g33050 EDA39 (embryo sac development arrest 39) O.I. H.G. S.X.
0.80 92.5 0.93 Contig11154_at Contig11154 - - 1e-15 At5g66210 CPK28 O.I. H.G. S.X.
0.73 88.7 0.92 HR01A09u_at HR01A09u - - 2e+0 At5g55000 FIP2 O.I. H.G. S.X.
0.53 69.7 0.92 Contig6325_at Contig6325 - - 4e-1 At5g25490 zinc finger (Ran-binding) family protein O.I. H.G. S.X.
0.50 66.9 0.92 Contig11957_at Contig11957 - - 5e-2 At3g48280 CYP71A25 O.I. H.G. S.X.
0.47 62.2 0.93 Contig12027_at Contig12027 ORG4 - 2e-3 At2g06010 ORG4 (OBP3-RESPONSIVE GENE 4) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.0 97.9 GSM261053 Bonus Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8 97.0 GSM261077 Albina e-16 Hardened rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4 96.6 GSM372955 genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1 96.2 GSM372947 genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0 96.0 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
3.9 95.8 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
3.9 95.8 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
3.8 95.7 GSM261055 Bonus Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5 95.1 GSM261054 Bonus Hardened rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the grape gene, 1620562_at, orthologous to the query gene, Contig8468_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 1620562_at At4g33050 hypothetical protein LOC100250890 - 3e-20 At4g33050 EDA39 (embryo sac development arrest 39) O.I. H.G. S.X.
0.75 91.3 1614806_s_at At4g33050 hypothetical protein LOC100264507 - 2e-4 At2g25000 WRKY60 O.I. H.G. S.X.
0.70 88.6 1616557_s_at At4g33050 hypothetical protein LOC100252599 - 3e-2 At1g01490 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.70 88.6 1614461_s_at At4g33050 hypothetical protein LOC100252599 /// hypothetical LOC100254334 - 3e-1 At5g24770 VSP2 (VEGETATIVE STORAGE PROTEIN 2) O.I. H.G. S.X.
0.65 85.0 1622399_at At4g33050 similar to DNA-binding protein - 2e-27 At4g31550 WRKY11 O.I. H.G. S.X.
0.64 84.7 1610949_s_at At4g33050 hypothetical protein LOC100247492 - 2e+0 At1g01490 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.64 84.7 1609265_at At4g33050 hypothetical protein LOC100255460 - 5e-2 At3g60530 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.61 83.2 1611285_s_at At4g33050 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 O.I. H.G. S.X.
0.58 79.8 1611550_at At4g33050 hypothetical protein LOC100263619 - 2e-9 At4g11070 WRKY41 O.I. H.G. S.X.
0.51 73.2 1610064_at At4g33050 similar to DNA-binding protein - 3e-19 At2g38470 WRKY33 O.I. H.G. S.X.
0.44 64.1 1617358_s_at At4g33050 hypothetical protein LOC100246286 /// hypothetical LOC100254879 /// hypothetical protein LOC100258299 /// hypothetical protein LOC100258874 /// hypothetical protein LOC100264041 /// hypothetical protein LOC100265184 - 2e+0 At2g45650 AGL6 (AGAMOUS-LIKE 6) O.I. H.G. S.X.
0.39 54.9 1615596_s_at At4g33050 hypothetical protein LOC100264822 - 1e-4 At2g36320 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.36 50.7 1613186_at At4g33050 hypothetical protein LOC100264822 - 1e-4 At2g36320 zinc finger (AN1-like) family protein O.I. H.G. S.X.
0.34 46.8 1606793_at At4g33050 hypothetical protein LOC100255095 - 1e+0 At1g29850 double-stranded DNA-binding family protein O.I. H.G. S.X.
0.29 37.7 1611650_at At4g33050 hypothetical protein LOC100244122 - 3e-26 At2g23320 WRKY15 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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