Co-expression analysis

Gene ID	Contig8468_at
Gene name
Homology with Arabidopsis	Similar to At4g33050: EDA39 (embryo sac development arrest 39) (HF=1e-12)
Module size	6 genes
NF	0.66
%ile	88.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.93	Contig8468_at	Contig8468	-	-	1e-12	At4g33050	EDA39 (embryo sac development arrest 39)	O.I.	H.G.	S.X.	Please select
0.80	92.5	0.93	Contig11154_at	Contig11154	-	-	1e-15	At5g66210	CPK28	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.92	HR01A09u_at	HR01A09u	-	-	2e+0	At5g55000	FIP2	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.92	Contig6325_at	Contig6325	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.92	Contig11957_at	Contig11957	-	-	5e-2	At3g48280	CYP71A25	O.I.	H.G.	S.X.	Please select
0.47	62.2	0.93	Contig12027_at	Contig12027	ORG4	-	2e-3	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.0	97.9	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.8	97.0	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.4	96.6	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.1	96.2	GSM372947	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.0	96.0	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.9	95.8	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
3.9	95.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.8	95.7	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.206380.1.S1_at, orthologous to the query gene, Contig8468_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	PtpAffx.206380.1.S1_at	At4g33050	hypothetical protein	-	2e-13	At5g57010	calmodulin-binding family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.225906.1.S1_s_at	At4g33050	hypothetical protein	-	2e+1	At5g38770	AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.225365.1.S1_s_at	At4g33050	hypothetical protein	-	2e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.225897.1.S1_s_at	At4g33050	hypothetical protein	-	1e+1	At5g56940	ribosomal protein S16 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.225199.1.S1_s_at	At4g33050	hypothetical protein	-	2e+1	At5g64400	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.225116.1.S1_s_at	At4g33050	hypothetical protein	-	1e+1	At4g39300	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.208362.1.S1_s_at	At4g33050	hypothetical protein	-	1e+1	At4g39300	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.222190.1.S1_s_at	At4g33050	hypothetical protein	-	1e+1	At4g39300	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.216844.1.S1_at	At4g33050	hypothetical protein	-	4e-3	At1g14550	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.225250.1.S1_at	At4g33050	hypothetical protein	-	3e-3	At1g26400	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.97	99.9	PtpAffx.207674.1.S1_at	At4g33050	hypothetical protein	-	1e-3	At3g55150	ATEXO70H1 (exocyst subunit EXO70 family protein H1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.95	99.7	PtpAffx.220130.1.S1_at	At4g33050	hypothetical protein	-	1e-2	At3g29590	AT5MAT	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	PtpAffx.225249.1.S1_s_at	At4g33050	hypothetical protein	-	2e-4	At5g44360	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	PtpAffx.138864.1.A1_at	At4g33050	-	-	6e-5	At1g66950	PDR11 (PLEIOTROPIC DRUG RESISTANCE 11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	PtpAffx.2682.1.A1_at	At4g33050	hypothetical protein	-	5e-1	Atcg00070	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	PtpAffx.200047.1.S1_at	At4g33050	hypothetical protein	-	3e-17	At1g55230	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.82	96.3	PtpAffx.38964.2.S1_at	At4g33050	hypothetical protein	-	2e-5	At3g28580	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.70	91.7	PtpAffx.209333.1.S1_at	At4g33050	hypothetical protein	-	9e-1	At2g02300	AtPP2-B5 (Phloem protein 2-B5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.69	91.5	PtpAffx.133781.1.A1_at	At4g33050	aminophospholipid ATPase	-	7e-1	At1g52630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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