Co-expression analysis

Gene ID Contig8459_at
Gene name
Homology with ArabidopsisSimilar to At4g36900: RAP2.10 (related to AP2 10) (HF=4e-1)
Module size 6 genes
NF 0.37
%ile 50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.70.95Contig8459_atContig8459--4e-1At4g36900RAP2.10 (related to AP2 10)O.I.H.G.S.X.
0.3849.50.96Contig7320_atContig7320--2e-1At1g26690emp24/gp25L/p24 family proteinO.I.H.G.S.X.
0.3647.10.97Contig5853_atContig5853--3e-1At1g64140-O.I.H.G.S.X.
0.3545.10.96Contig13861_atContig13861--5e-1At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.3342.60.96Contig3636_atContig3636--9e-9At5g21090leucine-rich repeat protein, putativeO.I.H.G.S.X.
0.2427.20.96EBma04_SQ003_K13_s_atEBma04_SQ003_K13--2e+0At3g60520unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6077.30.95Contig5622_atContig5622--2e+0Atmg01190-O.I.H.G.S.X.
0.4762.20.94HT08E07u_x_atHT08E07u--1e+0At1g25054UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylaseO.I.H.G.S.X.
0.4661.00.95Contig7607_atContig7607--2e-13At1g53580GLY3 (GLYOXALASE II 3)O.I.H.G.S.X.
0.4458.90.94HD11C22r_s_atHD11C22r--1e+1At4g35950ARAC6 (ARABIDOPSIS RAC-LIKE 6)O.I.H.G.S.X.
0.4458.90.95HZ59C04r_s_atHZ59C04r--2e+0At3g15111unknown proteinO.I.H.G.S.X.
0.4458.90.95Contig4911_atContig4911--7e-1At5g09280pectate lyase family proteinO.I.H.G.S.X.
0.4458.90.96Contig4316_atContig4316--8e-17At5g14520pescadillo-relatedO.I.H.G.S.X.
0.4255.20.93Contig9907_atContig9907--4e-11At1g07410ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B)O.I.H.G.S.X.
0.4053.10.95rbaal5d06_s_atrbaal5d06--1e+0At5g45113mitochondrial transcription termination factor-related / mTERF-relatedO.I.H.G.S.X.
0.4053.10.97HX03D08u_s_atHX03D08u--6e-1At1g04960-O.I.H.G.S.X.
0.3849.50.96Contig3294_s_atContig3294--5e-4At5g02780In2-1 protein, putativeO.I.H.G.S.X.
0.3647.10.91Contig4361_s_atContig4361--3e-6At5g61500ATG3O.I.H.G.S.X.
0.3342.60.96Contig8286_atContig8286--3e-2At3g19010oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.3342.60.97Contig3403_s_atContig3403--2e-2At5g0385040S ribosomal protein S28 (RPS28B)O.I.H.G.S.X.
0.3138.60.95EBem05_SQ004_D02_s_atEBem05_SQ004_D02--2e+0At3g18773zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3138.60.96HW09P11u_s_atHW09P11u--1e+0At4g17310unknown proteinO.I.H.G.S.X.
0.3138.60.96Contig5096_atContig5096--2e-12At4g16660heat shock protein 70, putative / HSP70, putativeO.I.H.G.S.X.
0.2935.50.95Contig7046_atContig7046--2e+0At2g21600ATRER1BO.I.H.G.S.X.
0.2935.50.95Contig7606_atContig7606--3e-12At2g25280-O.I.H.G.S.X.
0.2935.50.95S0001000015G12F1_s_atS0001000015G12F1--3e+0At1g17700PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)O.I.H.G.S.X.
0.2732.10.96Contig4462_atContig4462--3e-3At2g18162CPuORF1 (Conserved peptide upstream open reading frame 1)O.I.H.G.S.X.
0.2630.40.94Contig13425_atContig13425--6e+0At4g1672060S ribosomal protein L15 (RPL15A)O.I.H.G.S.X.
0.2528.90.94Contig10511_atContig10511--2e-5At1g34320unknown proteinO.I.H.G.S.X.
0.2528.90.96Contig6461_s_atContig6461--7e-17At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.2528.90.97Contig6910_atContig6910--9e-4At5g43590patatin, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.899.3GSM261046after 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.398.5GSM398255Martin_3d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
7.098.4GSM398257Martin_3d_rep3GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
6.498.1GSM215732gibberellin plus Yariv-reagent treatment rep2GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
6.298.0GSM398256Martin_3d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
6.097.9GSM398258Martin_5d_rep1GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
5.297.4GSM398259Martin_5d_rep2GSE15970Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley GenotypesLink to GEO
4.897.0GSM238421Endosperm 0 h; Seed germination Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.897.0GSM215728gibberellin treatment rep1GSE8712The effects of Yariv-reagent on barley aleurone GA signalingLink to GEO
4.596.7GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stressLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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