Co-expression analysis

Gene ID	Contig8459_at
Gene name
Homology with Arabidopsis	Similar to At4g36900: RAP2.10 (related to AP2 10) (HF=4e-1)
Module size	6 genes
NF	0.37
%ile	50.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	0.95	Contig8459_at	Contig8459	-	-	4e-1	At4g36900	RAP2.10 (related to AP2 10)	O.I.	H.G.	S.X.	Please select
0.38	49.5	0.96	Contig7320_at	Contig7320	-	-	2e-1	At1g26690	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.97	Contig5853_at	Contig5853	-	-	3e-1	At1g64140	-	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.96	Contig13861_at	Contig13861	-	-	5e-1	At3g49570	LSU3 (RESPONSE TO LOW SULFUR 3)	O.I.	H.G.	S.X.	Please select
0.33	42.6	0.96	Contig3636_at	Contig3636	-	-	9e-9	At5g21090	leucine-rich repeat protein, putative	O.I.	H.G.	S.X.	Please select
0.24	27.2	0.96	EBma04_SQ003_K13_s_at	EBma04_SQ003_K13	-	-	2e+0	At3g60520	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	99.3	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
7.3	98.5	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.0	98.4	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.4	98.1	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.2	98.0	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.0	97.9	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.2	97.4	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.8	97.0	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM215728	gibberellin treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
4.5	96.7	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress

Inter-species module comparison

A co-expression module including the grape gene, 1621757_at, orthologous to the query gene, Contig8459_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1621757_at	At4g36900	-	-	8e-1	At1g29960	peptidase/ serine-type peptidase	O.I.	H.G.	S.X.	Please select
0.19	20.9	1608479_at	At4g36900	hypothetical protein LOC100263231	-	1e+0	At5g07850	transferase family protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1621502_at	At4g36900	hypothetical protein LOC100241364	-	8e-3	At3g20120	CYP705A21	O.I.	H.G.	S.X.	Please select
0.09	9.4	1614286_at	At4g36900	hypothetical protein LOC100240938	-	9e-6	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1622789_x_at	At4g36900	-	-	4e+1	At5g53590	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.01	2.1	1620227_at	At4g36900	hypothetical protein LOC100251345	-	4e-37	At2g35795	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage