Co-expression analysis

Gene ID	Contig8457_at
Gene name
Homology with Arabidopsis	Similar to At2g22080: unknown protein (HF=2e-5)
Module size	6 genes
NF	0.32
%ile	42.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	66.9	0.93	Contig8457_at	Contig8457	-	-	2e-5	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.93	Contig19617_at	Contig19617	-	-	2e+0	At5g55320	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.93	Contig12730_at	Contig12730	-	-	2e+0	At3g59640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig12896_at	Contig12896	-	-	2e-3	At5g08630	DDT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	0.93	Contig15872_at	Contig15872	-	-	1e+0	At4g24410	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	0.94	Contig20397_at	Contig20397	-	-	2e-3	At1g53420	serine/threonine protein kinase-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	99.4	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
11.3	99.3	GSM213443	Barley seeds with P. aeruginosa PA5021 mutant for 12hr	GSE8618	P. aeruginosa virulent factor to barley
10.6	99.2	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.9	98.3	GSM215730	Control (DMSO) treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.9	98.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.4	98.1	GSM215727	Control (DMSO) treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
6.4	98.1	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
5.0	97.2	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
4.8	97.0	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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