Co-expression analysis

Gene ID	Contig8408_at
Gene name
Homology with Arabidopsis	Similar to At1g43130: LCV2 (LIKE COV 2) (HF=5e-20)
Module size	8 genes
NF	0.51
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	0.90	Contig8408_at	Contig8408	-	-	5e-20	At1g43130	LCV2 (LIKE COV 2)	O.I.	H.G.	S.X.	Please select
0.74	89.1	0.86	EBpi05_SQ002_I18_s_at	EBpi05_SQ002_I18	-	-	2e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.89	Contig7455_at	Contig7455	-	-	1e-1	At3g16720	ATL2	O.I.	H.G.	S.X.	Please select
0.56	74.3	0.89	Contig4155_at	Contig4155	-	-	2e-38	At5g54310	AGD5 (ARF-GAP domain 5)	O.I.	H.G.	S.X.	Please select
0.50	66.9	0.89	Contig5830_s_at	Contig5830	-	-	7e+0	At2g25060	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	0.89	HVSMEl0002K19r2_at	HVSMEl0002K19r2	-	-	7e+0	At4g31790	diphthine synthase, putative (DPH5)	O.I.	H.G.	S.X.	Please select
0.35	45.1	0.89	Contig20645_at	Contig20645	-	-	2e-14	At4g33760	tRNA synthetase class II (D, K and N) family protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	0.88	Contig8103_s_at	Contig8103	-	-	4e-2	At3g53235	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.6	96.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.8	95.7	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.5	95.1	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
3.0	93.8	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.9	93.4	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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