Co-expression analysis

Gene ID Contig8408_at
Gene name
Homology with ArabidopsisSimilar to At1g43130: LCV2 (LIKE COV 2) (HF=5e-20)
Module size 8 genes
NF 0.51
%ile 70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6784.70.90Contig8408_atContig8408--5e-20At1g43130LCV2 (LIKE COV 2)O.I.H.G.S.X.
0.7489.10.86EBpi05_SQ002_I18_s_atEBpi05_SQ002_I18--2e+0At4g30660hydrophobic protein, putative / low temperature and salt responsive protein, putativeO.I.H.G.S.X.
0.6784.70.89Contig7455_atContig7455--1e-1At3g16720ATL2O.I.H.G.S.X.
0.5674.30.89Contig4155_atContig4155--2e-38At5g54310AGD5 (ARF-GAP domain 5)O.I.H.G.S.X.
0.5066.90.89Contig5830_s_atContig5830--7e+0At2g25060plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.4053.10.89HVSMEl0002K19r2_atHVSMEl0002K19r2--7e+0At4g31790diphthine synthase, putative (DPH5)O.I.H.G.S.X.
0.3545.10.89Contig20645_atContig20645--2e-14At4g33760tRNA synthetase class II (D, K and N) family proteinO.I.H.G.S.X.
0.3443.60.88Contig8103_s_atContig8103--4e-2At3g53235unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.696.8GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.596.7GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
4.096.0GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.895.7GSM261045after 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
3.595.1GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.394.6GSM261073Albina f-17 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.294.3GSM431548pathogen isolates: Mock - rep3GSE17238Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminisLink to GEO
3.093.8GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
2.993.4GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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