Co-expression analysis

Gene ID Contig8332_at
Gene name
Homology with ArabidopsisSimilar to At5g13020: emsy N terminus domain-containing protein / ENT domain-containing protein (HF=2e-8)
Module size 6 genes
NF 0.50
%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.00.96Contig8332_atContig8332--2e-8At5g13020emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.4661.00.96HV_CEa0010M13r2_s_atHV_CEa0010M13r2--9e-1At4g01670unknown proteinO.I.H.G.S.X.
0.4458.90.97Contig19284_atContig19284--2e-20At1g48410AGO1 (ARGONAUTE 1)O.I.H.G.S.X.
0.4356.40.97Contig9449_s_atContig9449--3e-18At2g27350OTU-like cysteine protease family proteinO.I.H.G.S.X.
0.4356.40.97rbaal22m07_atrbaal22m07--2e-1At1g06440ubiquitin thiolesteraseO.I.H.G.S.X.
0.3240.30.96Contig9752_atContig9752--3e+0At2g11651unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.8GSM130806JA and salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.595.1GSM130800control, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.494.8GSM261079Albina e-16 Hardened rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1Link to GEO
3.294.3GSM282038Malting_kilned_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.294.3GSM130802salinity stress, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.194.1GSM130804JA, biological rep2GSE5605Expression data from barley under salinity stress and JA treatmentLink to GEO
3.194.1GSM238434Embryo 24 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.093.8GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.093.8GSM282040Malting_kilned_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.5644.1.S1_at, orthologous to the query gene, Contig8332_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.8Zm.5644.1.S1_atAt5g13020hypothetical protein LOC100276211-1e-8At3g12140emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.5976.1Zm.1743.1.A1_atAt5g13020IAA19 - auxin-responsive Aux/IAA family member-2e-9At4g14550IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)O.I.H.G.S.X.
0.5065.7Zm.974.1.A1_atAt5g13020--6e-1At5g47060senescence-associated protein-relatedO.I.H.G.S.X.
0.4861.3Zm.9314.1.A1_atAt5g13020hypothetical protein LOC100192585-2e-31At5g41700UBC8 (UBIQUITIN CONJUGATING ENZYME 8)O.I.H.G.S.X.
0.4759.9Zm.14322.1.A1_atAt5g13020--5e-2At2g03160ASK19 (ARABIDOPSIS SKP1-LIKE 19)O.I.H.G.S.X.
0.4455.7Zm.17834.1.S1_atAt5g13020hypothetical protein LOC100276988-4e-1At2g28230-O.I.H.G.S.X.
0.4352.8Zm.1860.1.A1_atAt5g13020gibberellin-regulated protein 2-2e+0At1g22690gibberellin-responsive protein, putativeO.I.H.G.S.X.
0.3233.4Zm.1562.1.A1_atAt5g13020hypothetical protein LOC100193316-5e+0At5g49015Expressed proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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