CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8332_at

Gene name
Homology with Arabidopsis Similar to At5g13020: emsy N terminus domain-containing protein / ENT domain-containing protein (HF=2e-8)

Module size 6 genes

NF 0.50

%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 0.96 Contig8332_at Contig8332 - - 2e-8 At5g13020 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.46 61.0 0.96 HV_CEa0010M13r2_s_at HV_CEa0010M13r2 - - 9e-1 At4g01670 unknown protein O.I. H.G. S.X.
0.44 58.9 0.97 Contig19284_at Contig19284 - - 2e-20 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.
0.43 56.4 0.97 Contig9449_s_at Contig9449 - - 3e-18 At2g27350 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.43 56.4 0.97 rbaal22m07_at rbaal22m07 - - 2e-1 At1g06440 ubiquitin thiolesterase O.I. H.G. S.X.
0.32 40.3 0.96 Contig9752_at Contig9752 - - 3e+0 At2g11651 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.8 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.5 95.1 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.4 94.8 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2 94.3 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.2 94.3 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.1 94.1 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.1 94.1 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.0 93.8 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the grape gene, 1614103_at, orthologous to the query gene, Contig8332_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.6 1614103_at At5g13020 hypothetical protein LOC100257061 - 2e-2 At3g12140 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.74 91.0 1619145_s_at At5g13020 hypothetical protein LOC100250496 - 6e-36 At2g27050 EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1) O.I. H.G. S.X.
0.61 83.2 1615901_at At5g13020 hypothetical protein LOC100248277 - 5e+0 At4g13075 RALFL30 (RALF-LIKE 30) O.I. H.G. S.X.
0.57 79.8 1613129_at At5g13020 hypothetical protein LOC100266068 - 2e-13 At4g17330 ATG2484-1 O.I. H.G. S.X.
0.56 79.4 1615632_a_at At5g13020 hypothetical protein LOC100262698 - 3e-13 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.53 75.2 1613738_at At5g13020 hypothetical protein LOC100265879 - 6e-1 At3g25420 scpl21 (serine carboxypeptidase-like 21) O.I. H.G. S.X.
0.53 75.2 1611483_at At5g13020 hypothetical protein LOC100253154 - 7e+0 Atmg00320 - O.I. H.G. S.X.
0.48 68.8 1609716_at At5g13020 hypothetical protein LOC100265922 - 3e-1 At2g21210 auxin-responsive protein, putative O.I. H.G. S.X.
0.48 68.8 1607726_at At5g13020 hypothetical protein LOC100262331 - 8e-25 At4g34100 protein binding / zinc ion binding O.I. H.G. S.X.
0.44 64.1 1607202_s_at At5g13020 hypothetical protein LOC100242295 - 2e-65 At5g23090 NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13) O.I. H.G. S.X.
0.38 53.6 1617845_at At5g13020 hypothetical protein LOC100263968 - 4e-35 At2g38630 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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