Co-expression analysis

Gene ID	Contig8332_at
Gene name
Homology with Arabidopsis	Similar to At5g13020: emsy N terminus domain-containing protein / ENT domain-containing protein (HF=2e-8)
Module size	6 genes
NF	0.50
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.96	Contig8332_at	Contig8332	-	-	2e-8	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	HV_CEa0010M13r2_s_at	HV_CEa0010M13r2	-	-	9e-1	At4g01670	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig19284_at	Contig19284	-	-	2e-20	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	rbaal22m07_at	rbaal22m07	-	-	2e-1	At1g06440	ubiquitin thiolesterase	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.5	95.1	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.4	94.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.1	94.1	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.1	94.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.200070.1.S1_x_at, orthologous to the query gene, Contig8332_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	91.5	PtpAffx.200070.1.S1_x_at	At5g13020	hypothetical protein	-	8e-28	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.201628.1.S1_at	At5g13020	hypothetical protein	-	8e-2	At1g06060	RanBPM-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	Ptp.5251.1.S1_s_at	At5g13020	hypothetical protein	-	6e-3	At3g04710	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.225673.1.S1_at	At5g13020	hypothetical protein	-	3e-91	At5g66240	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.162072.1.S1_s_at	At5g13020	hypothetical protein	-	4e-11	At5g15440	EDL1 (EID1-like 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.206434.1.S1_at	At5g13020	hypothetical protein	-	4e-9	At5g22030	UBP8 (UBIQUITIN-SPECIFIC PROTEASE 8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	PtpAffx.215599.1.S1_s_at	At5g13020	SW2/SNF2 family-like protein /// hypothetical protein	-	3e-16	At2g40770	ATP binding / DNA binding / helicase/ nucleic acid binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.208901.1.S1_at	At5g13020	hypothetical protein	-	6e-1	At5g39370	S-locus glycoprotein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.424.2.A1_s_at	At5g13020	global transcription factor group	-	7e-49	At4g08350	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	Ptp.5550.1.S1_at	At5g13020	hypothetical protein	-	1e-42	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.7216.3.S1_s_at	At5g13020	hypothetical protein	-	3e-1	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.200874.1.S1_s_at	At5g13020	hypothetical protein	-	1e-57	At3g52140	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.66783.1.S1_at	At5g13020	hypothetical protein	-	4e-6	At5g09860	nuclear matrix protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.95687.1.A1_at	At5g13020	hypothetical protein	-	4e-4	At2g25010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.208968.1.S1_s_at	At5g13020	hypothetical protein	-	1e-77	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.100452.1.S1_at	At5g13020	hypothetical protein	-	1e-7	At1g68310	vacuolar sorting signal binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.206508.1.S1_s_at	At5g13020	hypothetical protein	-	3e-2	At5g58020	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.16432.1.S1_at	At5g13020	hypothetical protein	-	3e-8	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.218665.1.S1_at	At5g13020	hypothetical protein	-	1e-15	At3g06910	ULP1A (UB-LIKE PROTEASE 1A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	Ptp.6543.1.S1_at	At5g13020	hypothetical protein	-	2e-121	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.160266.1.A1_s_at	At5g13020	histone acetyltransferase	-	4e-97	At5g09740	HAM2 (histone acetyltransferase of the MYST family 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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