Co-expression analysis

Gene ID	Contig8332_at
Gene name
Homology with Arabidopsis	Similar to At5g13020: emsy N terminus domain-containing protein / ENT domain-containing protein (HF=2e-8)
Module size	6 genes
NF	0.50
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	0.96	Contig8332_at	Contig8332	-	-	2e-8	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	61.0	0.96	HV_CEa0010M13r2_s_at	HV_CEa0010M13r2	-	-	9e-1	At4g01670	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.97	Contig19284_at	Contig19284	-	-	2e-20	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	Contig9449_s_at	Contig9449	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	0.97	rbaal22m07_at	rbaal22m07	-	-	2e-1	At1g06440	ubiquitin thiolesterase	O.I.	H.G.	S.X.	Please select
0.32	40.3	0.96	Contig9752_at	Contig9752	-	-	3e+0	At2g11651	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.5	95.1	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.4	94.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2	94.3	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.2	94.3	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.1	94.1	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.1	94.1	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.0	93.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.0	93.8	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the soybean gene, Gma.4995.2.S1_at, orthologous to the query gene, Contig8332_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	90.6	Gma.4995.2.S1_at	At5g13020	-	-	3e-4	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	GmaAffx.51799.1.S1_at	At5g13020	-	-	8e-1	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.867.1.S1_at	At5g13020	-	-	4e-27	At1g01160	SSXT protein-related / transcription co-activator-related	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.90745.1.S1_s_at	At5g13020	-	-	4e+0	At5g42235	Expressed protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.1651.1.S1_at	At5g13020	-	-	4e-1	At3g17880	ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.867.2.S1_a_at	At5g13020	-	-	8e-30	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.34491.1.S1_at	At5g13020	-	-	9e-13	At1g16360	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.22482.1.S1_x_at	At5g13020	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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