CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Contig8332_at

Gene name
Homology with Arabidopsis Similar to At5g13020: emsy N terminus domain-containing protein / ENT domain-containing protein (HF=2e-8)

Module size 6 genes

NF 0.50

%ile 70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 94.0 0.96 Contig8332_at Contig8332 - - 2e-8 At5g13020 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.46 61.0 0.96 HV_CEa0010M13r2_s_at HV_CEa0010M13r2 - - 9e-1 At4g01670 unknown protein O.I. H.G. S.X.
0.44 58.9 0.97 Contig19284_at Contig19284 - - 2e-20 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.
0.43 56.4 0.97 Contig9449_s_at Contig9449 - - 3e-18 At2g27350 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.43 56.4 0.97 rbaal22m07_at rbaal22m07 - - 2e-1 At1g06440 ubiquitin thiolesterase O.I. H.G. S.X.
0.32 40.3 0.96 Contig9752_at Contig9752 - - 3e+0 At2g11651 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.8 GSM130806 JA and salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.5 95.1 GSM130800 control, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.4 94.8 GSM261079 Albina e-16 Hardened rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.2 94.3 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.2 94.3 GSM130802 salinity stress, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.1 94.1 GSM130804 JA, biological rep2 GSE5605 Expression data from barley under salinity stress and JA treatment
3.1 94.1 GSM238434 Embryo 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.0 93.8 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM282040 Malting_kilned_Morex_rep2 GSE11200 Expression data from malting barley seeds

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g13020, orthologous to the query gene, Contig8332_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.46 59.8 At5g13020 831142 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO O.I. H.G. S.X.
0.73 85.5 At5g59710 836092 VIP2 (VIRE2 INTERACTING PROTEIN2) Encodes a nuclear-localized NOT (negative on TATA-less) domain-containing protein that interacts with the Agrobacterium VirE2 protein and is required for Agrobacterium-mediated plant transformation. It likely facilitates T-DNA integration into plant chromosomes and may play a role as a transcriptional regulator. O.I. H.G. S.X.
0.60 75.7 At1g50140 841436 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV O.I. H.G. S.X.
0.44 57.2 At5g08550 830755 ILP1 (increased level of polyploidy1-1D) Encodes a transcriptional repressor that is homologous to the C-terminal region of mammalian GC binding factor. It regulates endoreduplication through control of CYC2A expression. O.I. H.G. S.X.
0.43 55.3 At1g27690 839661 unknown protein F:molecular_function unknown;P:glycerol biosynthetic process;C:unknown;PB O.I. H.G. S.X.
0.28 30.3 At5g18960 832014 FRS12 (FAR1-related sequence 12) F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFM O.I. H.G. S.X.
0.26 24.4 At5g12370 831112 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) F:molecular_function unknown;P:exocytosis, vesicle docking;C:plasma membrane, membrane, exocyst;FMPOB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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