Co-expression analysis

Gene ID	Contig8303_at
Gene name
Homology with Arabidopsis	Similar to At5g38400: unknown protein (HF=7e+0)
Module size	6 genes
NF	0.68
%ile	89.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	0.94	Contig8303_at	Contig8303	-	-	7e+0	At5g38400	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	0.96	Contig2704_s_at	Contig2704	-	-	9e-1	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	O.I.	H.G.	S.X.	Please select
0.71	87.1	0.96	Contig15990_at	Contig15990	-	-	7e+0	At2g14910	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.94	Contig15087_at	Contig15087	-	-	8e-3	At5g14390	-	O.I.	H.G.	S.X.	Please select
0.53	69.7	0.94	EBed02_SQ002_A05_at	EBed02_SQ002_A05	-	-	1e+1	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.96	Contig9024_s_at	Contig9024	-	-	3e+0	At5g25310	catalytic	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
48.3	99.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
15.0	99.5	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.2	96.3	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
4.1	96.2	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.0	96.0	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.8	95.7	GSM282026	Malting_day1_Legacy_rep4	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.2	94.3	GSM238439	Embryo 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.2	94.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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