Co-expression analysis

Gene ID	Contig8296_at
Gene name
Homology with Arabidopsis	Similar to At1g20110: zinc finger (FYVE type) family protein (HF=2e-4)
Module size	9 genes
NF	0.40
%ile	54.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	94.3	0.76	Contig8296_at	Contig8296	-	-	2e-4	At1g20110	zinc finger (FYVE type) family protein	O.I.	H.G.	S.X.	Please select
0.59	75.8	0.81	Contig14738_at	Contig14738	-	-	6e-1	At2g18110	elongation factor 1-beta, putative / EF-1-beta, putative	O.I.	H.G.	S.X.	Please select
0.36	47.1	0.92	HVSMEf0019K02r2_s_at	HVSMEf0019K02r2	-	-	8e-1	At1g18030	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig4817_at	Contig4817	-	-	2e-56	At2g01140	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.31	38.6	0.92	Contig4816_at	Contig4816	-	-	5e+0	At1g70700	TIFY7	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.82	Contig438_at	Contig438	-	-	2e+0	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	O.I.	H.G.	S.X.	Please select
0.29	35.5	0.89	Contig4900_at	Contig4900	-	-	3e-12	At1g04760	ATVAMP726	O.I.	H.G.	S.X.	Please select
0.26	30.4	0.83	Contig9269_s_at	Contig9269	-	-	2e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.	Please select
0.19	19.6	0.83	Contig497_s_at	Contig497	-	-	6e-6	At5g38420	ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
26.2	99.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.9	99.4	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
11.9	99.3	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
10.8	99.2	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.8	99.2	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
9.3	99.0	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.6	98.6	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM431548	pathogen isolates: Mock - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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