Co-expression analysis

Gene ID	Contig8287_at
Gene name
Homology with Arabidopsis	Similar to At2g16440: DNA replication licensing factor, putative (HF=4e-65)
Module size	6 genes
NF	0.33
%ile	44.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.93	Contig8287_at	Contig8287	-	-	4e-65	At2g16440	DNA replication licensing factor, putative	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig11434_at	Contig11434	-	-	3e-20	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.94	Contig11436_at	Contig11436	-	-	5e-23	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.44	58.9	0.95	Contig19970_at	Contig19970	-	-	5e+0	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	0.94	Contig23462_at	Contig23462	-	-	5e+0	At5g43770	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	0.95	Contig8279_at	Contig8279	-	-	7e-18	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
3.1	94.1	GSM382237	Root_Control3	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM382235	Root_Control1	GSE15295	Mercury toxicity in barley roots
2.6	92.3	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.4	91.4	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
2.2	90.3	GSM215732	gibberellin plus Yariv-reagent treatment rep2	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.2	90.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
2.2	90.3	GSM215729	gibberellin plus Yariv-reagent treatment rep1	GSE8712	The effects of Yariv-reagent on barley aleurone GA signaling
2.2	90.3	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.1	89.7	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage