Co-expression analysis

Gene ID	Contig8283_at
Gene name
Homology with Arabidopsis	Similar to At2g28105: - (HF=3e-1)
Module size	7 genes
NF	0.67
%ile	89.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	0.91	Contig8283_at	Contig8283	-	-	3e-1	At2g28105	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	0.92	Contig11079_at	Contig11079	-	-	9e-9	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.91	EBpi05_SQ001_N05_at	EBpi05_SQ001_N05	-	-	3e+0	At2g29654	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	0.92	Contig2517_s_at	Contig2517	-	-	2e-6	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	0.92	HC112D12_T3_at	HC112D12_T3	-	-	7e+0	At4g34881	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.89	HVSMEa0008P17r2_at	HVSMEa0008P17r2	-	-	4e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.57	74.9	0.91	Contig23178_at	Contig23178	-	-	1e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.3	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.7	97.7	GSM238419	Endosperm 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238421	Endosperm 0 h; Seed germination Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.2	96.3	GSM238423	Endosperm 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.5	95.1	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.5	95.1	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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