Co-expression analysis

Gene ID Contig8273_at
Gene name
Homology with ArabidopsisSimilar to At5g03170: FLA11 (HF=2e+0)
Module size 21 genes
NF 0.14
%ile 17.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6985.50.86Contig8273_atContig8273--2e+0At5g03170FLA11O.I.H.G.S.X.
0.3647.10.91Contig104_x_atContig104--7e-2At3g07230wound-responsive protein-relatedO.I.H.G.S.X.
0.2935.50.92Contig12953_atContig12953--1e-4At3g16980NRPB9AO.I.H.G.S.X.
0.2326.10.93Contig9753_atContig9753--3e-46At3g22880DMC1 (DISRUPTION OF MEIOTIC CONTROL 1)O.I.H.G.S.X.
0.1716.90.93Contig6962_atContig6962--1e-1At5g19473-O.I.H.G.S.X.
0.1716.90.92Contig1430_atContig1430--3e-54At4g27960UBC9 (UBIQUITIN CONJUGATING ENZYME 9)O.I.H.G.S.X.
0.1615.30.93HA11C13u_s_atHA11C13u--8e-4At1g73230nascent polypeptide-associated complex (NAC) domain-containing proteinO.I.H.G.S.X.
0.1514.10.91Contig19526_atContig19526--7e-1At4g32460-O.I.H.G.S.X.
0.1412.90.90Contig17862_atContig17862--1e+0At5g10550GTE2 (Global transcription factor group E 2)O.I.H.G.S.X.
0.1311.60.91HVSMEn0005L15f_x_atHVSMEn0005L15f--9e+0At5g50430UBC33 (ubiquitin-conjugating enzyme 33)O.I.H.G.S.X.
0.1210.40.93EBem05_SQ003_G20_atEBem05_SQ003_G20--4e+0At5g09250KIWIO.I.H.G.S.X.
0.119.40.93Contig13840_atContig13840--2e-6At2g02880mucin-relatedO.I.H.G.S.X.
0.119.40.91Contig15746_atContig15746--2e+0At1g73890protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.108.40.92Contig12731_atContig12731--2e-4At3g59380FTA (FARNESYLTRANSFERASE A)O.I.H.G.S.X.
0.086.50.91Contig9551_atContig9551--1e-5At5g08170EMB1873 (EMBRYO DEFECTIVE 1873)O.I.H.G.S.X.
0.086.50.92Contig23814_atContig23814--1e+0At3g22580protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.086.50.94Contig12397_atContig12397--4e-2At2g24590splicing factor, putativeO.I.H.G.S.X.
0.086.50.92Contig17563_atContig17563--2e+0At4g01915unknown proteinO.I.H.G.S.X.
0.086.50.92Contig23073_atContig23073--2e-1At2g04622unknown proteinO.I.H.G.S.X.
0.075.80.90Contig11532_atContig11532--1e-22At2g42960protein kinase family proteinO.I.H.G.S.X.
0.064.80.94Contig13551_atContig13551--5e-4At1g22050MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.6GSM238432Embryo 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.698.6GSM261042before 3 days in mannitol medium rep1GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.698.6GSM261043before 3 days in mannitol medium rep2GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
7.398.5GSM238433Embryo 0 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
7.098.4GSM261044before 3 days in mannitol medium rep3GSE10330Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesisLink to GEO
4.897.0GSM282041Control_dryseed_Morex_rep2GSE11200Expression data from malting barley seedsLink to GEO
3.995.8GSM282025Control_dryseed_Morex_rep1GSE11200Expression data from malting barley seedsLink to GEO
3.795.5GSM238430Embryo 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.695.3GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grainsLink to GEO
3.494.8GSM238420Endosperm 0 h; Seed germination; Rep 1GSE9365Expression data from barley maturing and germinating grainsLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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